Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   MRO11_RS16280 Genome accession   NZ_CP095337
Coordinates   540778..542826 (-) Length   682 a.a.
NCBI ID   WP_154171116.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 535778..547826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS16255 (MRO11_16195) phnR 535982..536701 (-) 720 WP_332397187.1 phosphonate utilization transcriptional regulator PhnR -
  MRO11_RS16260 (MRO11_16200) rnk 536942..537352 (+) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  MRO11_RS16265 (MRO11_16205) yjjG 537406..538080 (-) 675 WP_004396500.1 pyrimidine 5'-nucleotidase -
  MRO11_RS16270 (MRO11_16210) elbB 538175..538825 (+) 651 WP_161425397.1 isoprenoid biosynthesis glyoxalase ElbB -
  MRO11_RS16275 (MRO11_16215) cqsA 539416..540597 (+) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MRO11_RS16280 (MRO11_16220) cqsS 540778..542826 (-) 2049 WP_154171116.1 response regulator Regulator
  MRO11_RS16285 (MRO11_16225) - 542880..545924 (-) 3045 WP_332397082.1 SMC family ATPase -
  MRO11_RS16290 (MRO11_16230) - 545928..547070 (-) 1143 WP_187025428.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78646.38 Da        Isoelectric Point: 5.7691

>NTDB_id=676455 MRO11_RS16280 WP_154171116.1 540778..542826(-) (cqsS) [Vibrio metschnikovii strain 19GA03SH07]
MDAVKKIYQYAEPNLTLVGWMGFIGFPIYYYVWTYLFPQGYESFWLRGFCSLLFAGIAFRHSFPKALQRYLPYYYLLSIG
FCLPFFFSFMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLPQAIISVLLAYFSVYVVVDAAPSQMISWTYVPIFIFTY
VFGNLFYFRNQVSHESKASLAKSFGAGIAHEMRNPLSALKSSLDVVRTLVPSPHSGQATHIINQQDLQQLHEILNDADEV
IHSGNETIDLLLTSIDQHRVSTSTFRKLSAATVVENAIHSFAYKRAVDRAAVSLTVNQDFDFFGSDTLLKFALYNLLKNA
FYYQSSEVFTINIELNRVDEQNVITVKDNGIGIEAEQLEEIFKDFYTFGKHNSYGLGLPFCRKVMHSFGGEIICHSVFGE
WTQFTLQFPDVESERIKQIKHDLLKSKSILLIGEPSLLSRHLNEQAFYLGFTLHMLTLSQAMQKEAYEFEFDLIFIDLAP
FETQWDKLSLLEGQLHFTEARISYIYDQSKRYPINISRYLTIYPIEIRHLLKDSIGTIEKLLFSIDELEVERGNIPQREV
NYQRSILLVDDNDSLRTFSAILLEKQGYDVYQAHDGQQALEILKQHTMDLILMDVEMPVIDGLQATNIIRSSMAEYRKTP
IIGYTGDNSSETINRLYRAGMNDYIVKPADKDKLLNKVADWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=676455 MRO11_RS16280 WP_154171116.1 540778..542826(-) (cqsS) [Vibrio metschnikovii strain 19GA03SH07]
ATGGATGCGGTAAAAAAAATATACCAATACGCAGAACCAAACTTAACGTTAGTTGGATGGATGGGCTTCATCGGTTTTCC
GATTTACTATTATGTATGGACTTACCTGTTTCCCCAAGGCTATGAATCGTTTTGGCTACGGGGATTTTGCTCGCTATTGT
TTGCCGGAATTGCTTTTCGCCACTCATTTCCCAAAGCATTACAGCGCTATTTACCGTATTACTATCTGCTTTCAATAGGC
TTTTGTTTACCTTTTTTCTTCTCTTTTATGATGTTGATGAACGATTGGTCGACAGTCTGGGCGATGTCTTTTATGGCATC
GATTTTCTTGCATATTCTGCTAGTTCATGAAACTAAGGTGATGTTGCCACAAGCGATTATTTCCGTATTACTCGCTTACT
TCTCGGTTTATGTTGTCGTTGATGCCGCCCCTAGTCAGATGATTTCTTGGACTTATGTACCTATTTTTATCTTTACTTAT
GTATTCGGTAATCTGTTCTACTTTCGCAATCAGGTATCACACGAGAGCAAAGCATCATTAGCAAAATCGTTTGGTGCAGG
AATTGCACACGAAATGCGTAATCCACTCAGTGCGCTTAAGTCTTCTCTTGATGTGGTGCGTACTCTAGTTCCTTCCCCCC
ATTCAGGCCAAGCAACTCATATTATTAATCAACAAGATTTACAGCAATTGCATGAAATATTAAATGATGCGGATGAGGTG
ATTCATTCTGGTAATGAAACCATAGATTTATTGTTAACGTCAATTGATCAGCATCGTGTCTCAACGTCGACCTTTCGAAA
ATTATCCGCTGCTACGGTGGTTGAAAATGCTATTCATTCTTTTGCCTACAAACGGGCCGTCGATCGAGCAGCCGTTTCAT
TAACCGTTAATCAAGATTTTGATTTTTTTGGTAGCGATACCTTACTTAAGTTTGCGTTGTACAATTTACTGAAAAATGCT
TTTTATTATCAAAGTAGTGAAGTGTTTACGATTAACATCGAATTGAATCGAGTCGATGAGCAGAATGTGATTACTGTCAA
AGATAATGGGATTGGTATTGAAGCAGAACAGCTCGAAGAAATTTTTAAGGACTTCTATACCTTTGGTAAACATAATAGTT
ATGGGTTAGGGCTGCCTTTTTGTCGAAAAGTTATGCATTCATTTGGCGGTGAAATTATTTGCCATTCCGTCTTCGGTGAA
TGGACCCAATTTACCCTTCAGTTTCCAGATGTTGAATCCGAACGTATCAAACAGATAAAACACGATCTACTAAAATCTAA
ATCGATTTTATTGATTGGTGAACCGAGTTTATTAAGTCGGCATCTGAATGAACAAGCTTTTTATTTAGGGTTTACTTTGC
ATATGCTCACTCTCAGTCAAGCGATGCAAAAAGAAGCGTATGAATTTGAATTTGATCTTATTTTTATTGATTTAGCTCCA
TTTGAAACACAGTGGGATAAATTGAGCTTACTGGAAGGTCAATTACATTTTACTGAAGCCAGAATTAGTTATATTTATGA
CCAATCTAAGCGTTATCCTATTAATATCTCTCGTTACTTAACAATTTATCCAATTGAAATACGTCATTTGTTAAAAGACA
GTATTGGAACCATCGAGAAGCTATTATTTTCGATTGATGAGCTTGAGGTTGAAAGGGGAAATATACCACAACGAGAAGTC
AATTATCAAAGAAGTATCTTATTAGTCGATGACAATGATTCTTTACGAACGTTTTCTGCTATATTATTAGAAAAGCAGGG
TTATGATGTTTATCAAGCTCATGATGGTCAACAAGCTTTAGAGATATTAAAACAACATACTATGGATTTAATCTTAATGG
ATGTTGAAATGCCGGTTATTGATGGATTACAGGCGACGAATATCATCCGCAGTTCAATGGCCGAATACCGAAAAACGCCT
ATTATTGGCTATACAGGGGATAATAGCTCAGAAACGATAAATCGTCTCTACCGTGCTGGAATGAATGATTATATTGTTAA
ACCTGCTGATAAAGATAAATTATTAAATAAAGTGGCCGATTGGTTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

57.101

100

0.572