Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MRO11_RS05985 Genome accession   NZ_CP095336
Coordinates   1340563..1342005 (-) Length   480 a.a.
NCBI ID   WP_161426336.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335563..1347005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS05965 (MRO11_05960) - 1335689..1338382 (+) 2694 WP_332396950.1 EAL domain-containing protein -
  MRO11_RS05970 (MRO11_05965) cdd 1338416..1339303 (-) 888 WP_332396951.1 cytidine deaminase -
  MRO11_RS05975 (MRO11_05970) - 1339467..1340144 (-) 678 WP_332396952.1 CidB/LrgB family autolysis modulator -
  MRO11_RS05980 (MRO11_05975) - 1340144..1340530 (-) 387 WP_115152724.1 CidA/LrgA family protein -
  MRO11_RS05985 (MRO11_05980) sbcB 1340563..1342005 (-) 1443 WP_161426336.1 exodeoxyribonuclease I Machinery gene
  MRO11_RS05990 (MRO11_05985) - 1342280..1342666 (-) 387 WP_158143956.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  MRO11_RS05995 (MRO11_05990) - 1342722..1343609 (-) 888 WP_158138370.1 LysR family transcriptional regulator -
  MRO11_RS06000 (MRO11_05995) budA 1343718..1344503 (+) 786 WP_332396970.1 acetolactate decarboxylase -
  MRO11_RS06005 (MRO11_06000) alsS 1344536..1346242 (+) 1707 WP_354672606.1 acetolactate synthase AlsS -
  MRO11_RS06010 (MRO11_06005) - 1346239..1346997 (+) 759 WP_154168365.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54723.06 Da        Isoelectric Point: 5.9164

>NTDB_id=676433 MRO11_RS05985 WP_161426336.1 1340563..1342005(-) (sbcB) [Vibrio metschnikovii strain 19GA03SH07]
MKNSRPHNADHQPTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITGITPQKAMA
EGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQQGNSRWDLLDVMRACHALRPEGIEWPE
NQEGFTSFKLEHLSKANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGML
GRERSYTSWVVPIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCPILAPAKTL
TAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQLYDGFFSPSDRAAMDIIRSAAPESLADLD
IQFSDQRIAPLLFRYRARHYPWTLNETEQRRWASHCQDYFATQLPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=676433 MRO11_RS05985 WP_161426336.1 1340563..1342005(-) (sbcB) [Vibrio metschnikovii strain 19GA03SH07]
TTGAAAAATTCCAGACCTCACAACGCAGATCATCAACCGACATTCTTCTTTTTAGATTATGAAACGTGGGGGACGAGCCC
AGCCAAAGATCGTCCCAGCCAGTTTGCTGGTGTGCGTACCGATATGGACTTTAATATCATTGGCGAGCCGCTGGTCATCT
ATTGTCAACTGCCTAGCGACTATTTGCCCTCACCAGAAGCCGCTTTGATAACGGGTATTACGCCACAAAAAGCGATGGCA
GAAGGGTTGCCAGAACCAGAATTTATTGCCCGCATTCATGCTGAACTGGCCACACCGAATACCACCAGTTTAGGCTATAA
CAGCATTCGTTTTGATGATGAAGTAACTCGCTATACCTGTTATCGGAATTTTATTGACCCCTACGCTTGGAGTTGGCAAC
AAGGCAACTCACGCTGGGATTTACTTGATGTGATGCGTGCTTGCCATGCTTTGCGCCCAGAAGGTATTGAATGGCCTGAA
AACCAAGAAGGCTTTACCAGTTTTAAACTGGAGCACCTTTCTAAAGCCAATGGTATAGAACACAGCAATGCTCACGATGC
GATGGCTGATGTGATTGCCACCATTGAGCTCGCAAAAAAAATCAAAGCAGCACAGCCTAAGCTGTTTGATTATTTCTTAT
CGATGCGCCATAAGCGTAAGCTGATTGATTTGGTTGATATTGTTAACATGACGCCATTAATGCATGTCTCTGGCATGCTA
GGACGTGAGCGCAGTTACACCAGTTGGGTTGTACCTATTGCTTGGCACCCCACCAATCAAAATGCCGTAATCGTGGTCGA
TTTGGCGAAAAATCCCGAGCCGTTATTCGAGTTAACCAGCGAGCAACTCTTACAGCGCCTCTATACTAAACATGATGACT
TGGCAGAGGGTGAGCTACCTGCGCCAGTTAAGTTGATTCATTTGAATAAGTGCCCCATTTTAGCCCCAGCGAAAACCCTT
ACCGCTGAAAATGCCGCCACCATAGGTATTAACCGCGAGCAGTGCTTGGCTCATCTTTCGCAAATTCGTCAACAACCAAC
ATTGCGTGAAAAGTTAGTGGATGTGTTTAGTGCTGAACGTGATTTTTCAGCCAGCAGTGATGTCGATAGCCAACTCTATG
ATGGGTTCTTTTCTCCTTCCGATCGCGCTGCAATGGACATTATTCGCTCTGCGGCGCCGGAGTCGCTCGCTGATTTAGAT
ATTCAATTCAGTGATCAACGCATTGCACCCCTGCTGTTTCGTTATCGAGCTCGTCATTATCCTTGGACACTCAATGAAAC
AGAACAGCGCCGCTGGGCAAGCCATTGTCAAGATTACTTTGCTACTCAGTTACCAAGTTATATGCTCAACTTAGAAAATT
TGGTCGAGCAACATCAACACGATGCTAAAAAAATCGCCATACTGAAAGCGGTGTATCATTATGTTGAAGCGCTGGCTTCT
TAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(17-197)

Exonuclease C-terminal (Exonuc_X-T_C)

(216-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.277

97.917

0.796