Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MRO11_RS02740 Genome accession   NZ_CP095336
Coordinates   601323..601841 (+) Length   172 a.a.
NCBI ID   WP_186460310.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 596323..606841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS02730 (MRO11_02735) - 596515..599367 (+) 2853 WP_342639064.1 pitrilysin family protein -
  MRO11_RS02735 (MRO11_02740) gshA 599638..601206 (+) 1569 WP_354672549.1 glutamate--cysteine ligase -
  MRO11_RS02740 (MRO11_02745) luxS 601323..601841 (+) 519 WP_186460310.1 S-ribosylhomocysteine lyase Regulator
  MRO11_RS02745 (MRO11_02750) - 601934..603208 (-) 1275 WP_154169133.1 CNNM domain-containing protein -
  MRO11_RS02750 (MRO11_02755) - 603515..604309 (-) 795 WP_154169131.1 inner membrane protein YpjD -
  MRO11_RS02755 (MRO11_02760) ffh 604522..605892 (+) 1371 WP_004395978.1 signal recognition particle protein -
  MRO11_RS02760 (MRO11_02765) rpsP 606130..606378 (+) 249 WP_004395977.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18984.75 Da        Isoelectric Point: 4.9229

>NTDB_id=676425 MRO11_RS02740 WP_186460310.1 601323..601841(+) (luxS) [Vibrio metschnikovii strain 19GA03SH07]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQAILSEKGIHTLEHLYAGFMRNHLNSEQVEIIDISP
MGCRTGFYMSLIGAPTEQQVATAWLAAMEDVLKVQDQKDIPELNEYQCGTAAMHSLSEAQAIAQQVLSSGIGVNKNDQLA
LPESMLKNLQVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=676425 MRO11_RS02740 WP_186460310.1 601323..601841(+) (luxS) [Vibrio metschnikovii strain 19GA03SH07]
ATGCCACTACTAGATAGCTTTACGGTTGATCATACTCGCATGCAAGCTCCCGCTGTACGGGTAGCGAAAACCATGCAAAC
CCCGAAAGGCGATACGATTACTGTATTTGACCTGCGTTTTACTCTGCCTAACCAAGCTATTTTGTCTGAAAAAGGAATTC
ATACTCTAGAGCACCTTTATGCAGGGTTCATGCGTAATCATCTTAATAGCGAACAGGTGGAAATTATTGATATTTCCCCA
ATGGGCTGCCGTACTGGATTTTATATGAGTTTGATTGGTGCACCTACCGAGCAGCAAGTAGCTACGGCGTGGTTAGCCGC
GATGGAAGATGTCTTGAAAGTGCAAGACCAAAAGGATATTCCAGAACTTAATGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCTTTATCCGAAGCACAAGCGATTGCTCAGCAAGTATTAAGTAGCGGTATTGGAGTGAACAAAAATGATCAACTTGCT
TTACCTGAATCGATGCTAAAAAATCTACAAGTGAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.302

100

0.843