Detailed information NTG0676422

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MRO11_RS02600
• Genome accession: NZ_CP095336
• Coordinates: 574419..575396 (+)
• Length: 325 a.a.
• NCBI ID: WP_332397065.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain 19GA03SH07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 569419..580396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRO11_RS02570 (MRO11_02575)	ispD	569669..570319 (+)	651	WP_233268205.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MRO11_RS02575 (MRO11_02580)	ispF	570316..570792 (+)	477	WP_004396002.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MRO11_RS02580 (MRO11_02585)	truD	570954..572000 (+)	1047	WP_342639068.1	tRNA pseudouridine(13) synthase TruD	-
MRO11_RS02585 (MRO11_02590)	surE	571993..572748 (+)	756	WP_154169165.1	5'/3'-nucleotidase SurE	-
MRO11_RS02590 (MRO11_02595)	-	572752..573378 (+)	627	WP_004395999.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MRO11_RS02595 (MRO11_02600)	nlpD	573378..574346 (+)	969	WP_170906522.1	murein hydrolase activator NlpD	-
MRO11_RS02600 (MRO11_02605)	rpoS	574419..575396 (+)	978	WP_332397065.1	RNA polymerase sigma factor RpoS	Regulator
MRO11_RS02605 (MRO11_02610)	mutS	575459..578041 (-)	2583	WP_342639067.1	DNA mismatch repair protein MutS	-
MRO11_RS02610 (MRO11_02615)	cysM	578203..579093 (-)	891	WP_158137831.1	cysteine synthase CysM	-
MRO11_RS02615 (MRO11_02620)	cysP	579354..580355 (+)	1002	WP_342639066.1	thiosulfate ABC transporter substrate-binding protein CysP	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37251.13 Da
• Isoelectric Point: 4.6671

>NTDB_id=676422 MRO11_RS02600 WP_332397065.1 574419..575396(+) (rpoS) [Vibrio metschnikovii strain 19GA03SH07]
MSISNSVTKVEDFDFDPEVINAAESDVEQLSATNLKEEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEKIAAELDKPVEDVNKMLRLNERISSVDTPIGGDGDKALLDILPDSNHSDPEVS
TQDDDIRLSLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFN
VDNDN

Nucleotide

• Length: 978 bp

>NTDB_id=676422 MRO11_RS02600 WP_332397065.1 574419..575396(+) (rpoS) [Vibrio metschnikovii strain 19GA03SH07]
ATGAGTATCAGCAATTCAGTCACTAAAGTCGAAGATTTTGATTTTGACCCTGAAGTTATCAACGCAGCGGAGTCTGACGT
TGAGCAACTATCCGCCACTAACCTCAAAGAAGAATACGATGCATCGAGCAAAAGCTTAGATGCAACACAGATGTATTTGA
GTGAAATTGGTTTTTCACCCCTTTTAACCGCCGAAGAAGAAGTCCTTTACGCTCGACGTGCATTACGTGGTGATGAGGCC
GCGCGCAAGCGAATGATTGAAAGTAACTTACGCTTGGTGGTGAAAATCTCTCGCCGTTACAGTAACCGTGGTCTAGCGTT
GCTCGATTTGATTGAAGAAGGCAACCTAGGCTTGATCCGAGCCGTTGAAAAATTTGATCCAGAACGAGGTTTTCGTTTTT
CGACTTATGCCACGTGGTGGATTCGTCAAACCATCGAACGGGCGCTGATGAATCAAACTCGTACCATTCGTCTACCGATT
CATGTCGTCAAAGAGCTCAATATTTATTTGCGCACAGCACGTGAACTTTCACAGCGTTTGGACCATGAACCTACGGCAGA
GAAAATTGCCGCTGAGCTGGACAAGCCAGTTGAAGATGTCAATAAAATGCTACGTTTGAATGAGCGGATCAGTTCTGTTG
ATACTCCGATCGGTGGCGATGGCGATAAAGCATTGTTGGATATTCTGCCAGACTCTAATCATTCTGATCCGGAAGTGTCG
ACTCAAGATGATGATATTCGTTTATCTTTGCTTAATTGGCTTGATGAGCTCAATCCAAAGCAAAAAGAAGTCTTGGCGCG
CCGTTTTGGATTACTGGGTTATGAACCTTCAACGTTGGAAGAAGTTGGGCGAGAAATTAATCTTACCCGTGAGCGAGTCA
GACAGATCCAAGTAGAAGGCTTACGCCGCCTACGCGAGATCCTCGTTAAACAAGGGCTGAATATGGAAGCTTTGTTTAAT
GTCGATAACGACAATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.866	100	0.895