Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA86_RS01945 Genome accession   NZ_CP109445
Coordinates   479571..480617 (-) Length   348 a.a.
NCBI ID   WP_329171859.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01477     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 474571..485617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA86_RS01925 (OHA86_01920) - 474740..475690 (+) 951 WP_329171855.1 GNAT family N-acetyltransferase -
  OHA86_RS01930 (OHA86_01925) - 475702..476619 (-) 918 WP_329182169.1 LysR family transcriptional regulator ArgP -
  OHA86_RS01935 (OHA86_01930) - 476689..477300 (+) 612 WP_329171856.1 LysE/ArgO family amino acid transporter -
  OHA86_RS01940 (OHA86_01935) - 477320..479401 (-) 2082 WP_329171858.1 SpoIIE family protein phosphatase -
  OHA86_RS01945 (OHA86_01940) cytR 479571..480617 (-) 1047 WP_329171859.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA86_RS01950 (OHA86_01945) - 481020..481856 (+) 837 WP_329171860.1 aldo/keto reductase -
  OHA86_RS01955 (OHA86_01950) - 481941..482948 (-) 1008 WP_329171862.1 LacI family DNA-binding transcriptional regulator -
  OHA86_RS01960 (OHA86_01955) - 483076..484128 (-) 1053 WP_329171864.1 ABC transporter substrate-binding protein -
  OHA86_RS01965 (OHA86_01960) - 484176..485216 (-) 1041 WP_329171866.1 ABC transporter permease -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37066.21 Da        Isoelectric Point: 7.0693

>NTDB_id=676410 OHA86_RS01945 WP_329171859.1 479571..480617(-) (cytR) [Streptomyces sp. NBC_01477]
MSAPSPVSRPTLEAVAARAGVSRATVSRVVNGGAGVRGPLAERVRAAVDELGYVPNQAARTLVTRRNGAIAVVVAEPESR
FFTDPFFAQQVRGISRELAAHDNQLVLLLTGGAADHERVGRYLTGGHVDGALIFSLHADDSLPVIARKAGVPTVIGGRPT
WPDPDTRRRTLYVDCDNRGGARDAVRRLLALGRRRIVHIAGPLDQPASVDRLDGFRDVLPGIGTAMIAEGDFTPEGGARA
MERLLERSPDLDGVFAASDVMASGALRVLRARGRRVPDDVAVVGFDDMVSVAEWTDPPLTTIRQDIEEMGRLMAQLLLHA
LEPSTDPDGVPAVSSIITPTRLVVRASA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=676410 OHA86_RS01945 WP_329171859.1 479571..480617(-) (cytR) [Streptomyces sp. NBC_01477]
TTGTCCGCTCCGTCCCCCGTCTCCCGCCCCACGCTCGAAGCCGTCGCGGCGCGGGCCGGGGTGTCGCGAGCCACCGTGTC
GCGGGTGGTCAACGGGGGAGCGGGGGTGCGCGGACCGCTGGCGGAAAGAGTGCGCGCGGCGGTCGACGAACTCGGGTACG
TGCCCAACCAGGCGGCCCGCACCCTGGTCACCCGGCGCAACGGCGCCATCGCCGTGGTCGTAGCGGAACCCGAGTCCCGG
TTCTTCACCGACCCCTTCTTCGCCCAGCAGGTGCGCGGCATCAGCAGGGAGCTGGCCGCGCACGACAACCAGCTGGTGCT
GCTGCTCACCGGGGGCGCCGCGGACCACGAGCGGGTCGGCCGCTATCTGACCGGCGGGCATGTGGACGGCGCGCTGATCT
TCTCGCTGCACGCCGACGACTCGCTGCCGGTCATCGCCCGCAAGGCGGGCGTGCCCACGGTGATCGGCGGCCGTCCCACC
TGGCCCGACCCGGACACCCGGCGCCGCACCCTCTACGTCGACTGCGACAACCGCGGCGGCGCGCGGGACGCGGTACGCCG
CCTGCTGGCGCTCGGCCGCCGCCGGATCGTGCACATAGCGGGACCGCTGGACCAGCCTGCCTCCGTCGACCGGCTCGACG
GCTTCCGCGATGTGCTGCCCGGTATCGGCACCGCGATGATCGCCGAGGGCGACTTCACGCCCGAGGGGGGCGCCCGGGCC
ATGGAGCGGCTGCTGGAGCGCTCTCCCGACCTCGACGGGGTCTTCGCCGCCTCCGATGTGATGGCCTCGGGCGCGCTGCG
GGTGCTGCGGGCCCGCGGCCGGCGGGTGCCGGACGACGTGGCGGTGGTCGGCTTCGACGACATGGTGTCGGTGGCGGAGT
GGACCGACCCGCCGCTGACCACGATCAGGCAGGACATCGAGGAGATGGGCCGGCTGATGGCGCAGCTGCTGCTGCACGCC
CTGGAGCCGTCGACCGACCCGGACGGCGTGCCCGCGGTGTCCTCGATCATCACCCCGACCCGGCTGGTGGTGCGCGCCTC
CGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.311

99.713

0.362