Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG223_RS38585 Genome accession   NZ_CP109444
Coordinates   8527016..8527795 (-) Length   259 a.a.
NCBI ID   WP_026151025.1    Uniprot ID   A0ABU4FGW0
Organism   Streptomyces sp. NBC_01478     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8522016..8532795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS38575 (OG223_38580) - 8523588..8524562 (+) 975 WP_329259027.1 GNAT family N-acetyltransferase -
  OG223_RS38580 (OG223_38585) - 8524878..8526860 (+) 1983 WP_329259030.1 ATP-dependent DNA helicase -
  OG223_RS38585 (OG223_38590) dinR/lexA 8527016..8527795 (-) 780 WP_026151025.1 transcriptional repressor LexA Regulator
  OG223_RS38590 (OG223_38595) nrdR 8528360..8528911 (+) 552 WP_329259033.1 transcriptional regulator NrdR -
  OG223_RS38595 (OG223_38600) - 8529077..8531971 (+) 2895 WP_329259036.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.72 Da        Isoelectric Point: 7.0668

>NTDB_id=676377 OG223_RS38585 WP_026151025.1 8527016..8527795(-) (dinR/lexA) [Streptomyces sp. NBC_01478]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=676377 OG223_RS38585 WP_026151025.1 8527016..8527795(-) (dinR/lexA) [Streptomyces sp. NBC_01478]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACACAAGCGCTCCCTGCCGGGCCGACCTCCCGGCATCCGGGCGGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGCTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACATCCTCGGTCGCACACCAACTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGCAGCGACCAGTCCTCGTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAACTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
AAGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375