Detailed information NTG0676340

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG223_RS22725
• Genome accession: NZ_CP109444
• Coordinates: 5072730..5073728 (-)
• Length: 332 a.a.
• NCBI ID: WP_329251568.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01478
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5067730..5078728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG223_RS22710 (OG223_22710)	-	5068639..5070138 (-)	1500	WP_329251562.1	MFS transporter	-
OG223_RS22715 (OG223_22715)	-	5070249..5071214 (+)	966	WP_329251565.1	YafY family protein	-
OG223_RS22720 (OG223_22720)	-	5071531..5072163 (-)	633	WP_329265420.1	TetR family transcriptional regulator	-
OG223_RS22725 (OG223_22725)	rpoS	5072730..5073728 (-)	999	WP_329251568.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG223_RS22730 (OG223_22730)	-	5073903..5074433 (+)	531	WP_329251570.1	N-acetyltransferase family protein	-
OG223_RS22735 (OG223_22735)	-	5074468..5075271 (-)	804	WP_329251573.1	class III extradiol ring-cleavage dioxygenase	-
OG223_RS22740 (OG223_22740)	-	5075396..5075902 (+)	507	WP_329251576.1	MarR family transcriptional regulator	-
OG223_RS22745 (OG223_22745)	-	5076015..5077574 (-)	1560	WP_329251578.1	MFS transporter	-
OG223_RS22750 (OG223_22750)	-	5077705..5078349 (-)	645	WP_329251581.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37179.95 Da
• Isoelectric Point: 5.5822

>NTDB_id=676340 OG223_RS22725 WP_329251568.1 5072730..5073728(-) (rpoS) [Streptomyces sp. NBC_01478]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDTTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide

• Length: 999 bp

>NTDB_id=676340 OG223_RS22725 WP_329251568.1 5072730..5073728(-) (rpoS) [Streptomyces sp. NBC_01478]
ATGGCAACCCGTGCCGTAGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCACAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTCGACGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTGGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGGTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACATACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGGCGGGAGCCCGAACACGCGGAGATCGCGGCCGAGTTGGACACGACCCCGGAGC
GCGTGACGAACGTCCTGGACTGGGCGCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACGCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTGATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTCCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364