Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG223_RS20150 Genome accession   NZ_CP109444
Coordinates   4502055..4503098 (+) Length   347 a.a.
NCBI ID   WP_329250343.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4497055..4508098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS20135 (OG223_20135) - 4498030..4498950 (-) 921 WP_329250335.1 carbohydrate ABC transporter permease -
  OG223_RS20140 (OG223_20140) - 4498965..4499957 (-) 993 WP_329250338.1 sugar ABC transporter permease -
  OG223_RS20145 (OG223_20145) - 4500240..4501562 (-) 1323 WP_329250341.1 extracellular solute-binding protein -
  OG223_RS20150 (OG223_20150) cytR 4502055..4503098 (+) 1044 WP_329250343.1 LacI family DNA-binding transcriptional regulator Regulator
  OG223_RS20155 (OG223_20155) - 4503401..4504825 (+) 1425 WP_329250346.1 GH1 family beta-glucosidase -
  OG223_RS20160 (OG223_20160) - 4504971..4505291 (-) 321 WP_329265926.1 hypothetical protein -
  OG223_RS20165 (OG223_20165) - 4505230..4505445 (+) 216 Protein_4006 Scr1 family TA system antitoxin-like transcriptional regulator -
  OG223_RS20170 - 4505553..4505744 (+) 192 WP_329250349.1 DUF397 domain-containing protein -
  OG223_RS20175 (OG223_20175) - 4505795..4507324 (+) 1530 WP_329250351.1 histidine ammonia-lyase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37062.20 Da        Isoelectric Point: 6.7817

>NTDB_id=676334 OG223_RS20150 WP_329250343.1 4502055..4503098(+) (cytR) [Streptomyces sp. NBC_01478]
MSPAEQPPPRADVRRPTLNAVAALAGVGRGTVSRVINGSPKVSAHARAAVERAIDELGYVPNPAARSLATRRTDSVAVVV
PEGEDRLFSEPYFSGIIRGVSAQLAIAQMQLLLVLTPDEKEYARLATYLSAHRVDGVLILAVHSGDTLPDRLHELAVPTV
LAGRRGHGEPLGHVRADNNGGARIAVQHLLATGRRTIATITGPLDMDVAQARLDGYREALESAGVTVDEDLIAYGDFREE
GGRAAMRELLRRRPGLDAVFAASDVMASGAVLELRASGRRVPDDVAVVGFDDSIVARHIDPPLTSVRQPLEEMGRTMASL
LLDEIAQRGGGHRQVVLPTRLVVRESA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=676334 OG223_RS20150 WP_329250343.1 4502055..4503098(+) (cytR) [Streptomyces sp. NBC_01478]
ATGAGCCCTGCCGAACAGCCGCCCCCGCGCGCGGACGTCCGGCGCCCGACTCTCAACGCCGTGGCCGCGCTCGCCGGCGT
CGGCCGCGGCACGGTCTCCCGGGTCATCAACGGCTCCCCCAAGGTGAGCGCCCACGCCCGCGCGGCGGTGGAGCGGGCGA
TCGACGAACTCGGCTACGTCCCGAACCCCGCCGCCCGCTCCCTGGCGACCCGCCGTACCGACTCGGTCGCCGTGGTCGTC
CCCGAGGGCGAGGACCGGCTCTTCTCCGAGCCCTACTTCTCGGGGATCATCCGCGGTGTGTCGGCCCAACTCGCCATCGC
GCAAATGCAGTTGCTGCTGGTACTGACGCCGGACGAGAAGGAGTACGCGCGACTGGCCACGTACCTGTCCGCACACCGGG
TGGACGGCGTACTGATCCTCGCGGTCCACAGCGGCGACACGCTGCCCGACCGACTGCACGAACTCGCCGTGCCGACCGTG
CTCGCCGGCCGGCGCGGCCACGGGGAGCCCCTGGGGCATGTCCGCGCGGACAACAACGGCGGTGCCAGGATCGCGGTCCA
GCACCTGCTGGCCACGGGCCGCCGGACCATCGCCACCATCACGGGCCCCCTGGACATGGACGTCGCCCAGGCCCGACTCG
ACGGCTACCGCGAGGCGTTGGAGAGCGCGGGCGTCACCGTCGACGAGGACCTGATCGCGTACGGCGACTTCCGTGAGGAG
GGCGGACGCGCGGCCATGCGGGAGCTGCTGCGCAGACGGCCCGGGCTCGACGCCGTCTTCGCCGCGTCCGACGTGATGGC
GTCGGGTGCGGTGCTGGAACTGCGCGCGTCGGGCCGGCGGGTGCCCGACGACGTCGCCGTCGTCGGCTTCGACGACTCGA
TCGTGGCCCGGCACATCGATCCCCCGCTGACCAGCGTCCGCCAGCCGCTGGAGGAGATGGGCCGCACCATGGCGAGCCTC
CTGCTGGACGAGATCGCCCAACGCGGCGGGGGTCACCGGCAGGTGGTGCTGCCGACGCGGCTGGTGGTGCGGGAGTCGGC
TTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(186-346)

Bacterial regulatory proteins, lacI family (LacI)

(17-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.873

97.695

0.36