Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG223_RS17890 Genome accession   NZ_CP109444
Coordinates   3987755..3989488 (+) Length   577 a.a.
NCBI ID   WP_329249245.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3982755..3994488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS17860 (OG223_17860) - 3983251..3984360 (-) 1110 WP_329265338.1 WD40 repeat domain-containing protein -
  OG223_RS17880 (OG223_17880) - 3985789..3986094 (+) 306 WP_019066994.1 hypothetical protein -
  OG223_RS17885 (OG223_17885) - 3986146..3987603 (+) 1458 WP_329249243.1 FGGY family carbohydrate kinase -
  OG223_RS17890 (OG223_17890) rcrP 3987755..3989488 (+) 1734 WP_329249245.1 ABC transporter ATP-binding protein Regulator
  OG223_RS17895 (OG223_17895) rcrQ 3989488..3991416 (+) 1929 WP_329249248.1 ABC transporter ATP-binding protein Regulator
  OG223_RS17900 (OG223_17900) - 3991576..3992883 (-) 1308 WP_329249251.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62756.98 Da        Isoelectric Point: 5.7183

>NTDB_id=676328 OG223_RS17890 WP_329249245.1 3987755..3989488(+) (rcrP) [Streptomyces sp. NBC_01478]
MLIRLLRTYLRPYRKPISLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAAVGRDIRAAIFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPTLTICVTIIVRRLRPLFRAMQVRLDSVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PVAPVFELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDTTDGEVLVDGVDVA
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGSGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676328 OG223_RS17890 WP_329249245.1 3987755..3989488(+) (rcrP) [Streptomyces sp. NBC_01478]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCTCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTCAACGCGCACATCATCGACAACGGTGTCGTCAAGGGTGACACCGGTTACA
TCCTGTCGTTCGGCGCCCTGATGATCGGGATCTCGCTCGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTACGGCGCC
CGCACCGCGGCGGCCGTCGGCCGGGACATCCGGGCCGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGCTCGTGTCCGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGCGGTG
CTGATCGCGGTGGTGCCGACGCTCACGATCTGCGTGACGATCATCGTGCGGCGGCTGCGGCCGCTGTTCCGGGCGATGCA
GGTGCGCCTGGACTCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGTGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACTCCGATCTGACCGAGATGCAGTTGAAGACCGGCAATCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGAGCAGTGTCGTGCCG
CCGGTGGCTCCCGTCTTCGAGCTGCGCCGGCACGGGCATCTGGAGGTCCGCGGGGTCGGCTTCTGCTACCCGGGTGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGCCTGGTTGACACGACCGACGGCGAGGTCCTCGTCGACGGAGTCGACGTGGCG
ACCATCGACCCGGTACTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTGGCGAC
CAACCTTCGCTACGGCAACCCGGACGCGACGGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGATTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACGAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGGGCGGCGCTCGCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACGATCA
GGGACGCGGACCGGATCGTCGTACTCGACGAGGGTCGGGTTGTGGGGTCGGGCCGGCATCACGAACTGATGGCGGACAAC
GAGACGTATCGGGAGATCGTGCTCTCCCAGTTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.898

100

0.392