Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MRN59_RS04000 Genome accession   NZ_CP095314
Coordinates   720526..722931 (+) Length   801 a.a.
NCBI ID   WP_354680514.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19MO06SA05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715526..727931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRN59_RS03975 (MRN59_03965) - 715684..716106 (+) 423 WP_354680512.1 Rrf2 family transcriptional regulator -
  MRN59_RS03980 (MRN59_03970) - 716382..717377 (-) 996 WP_354680513.1 LLM class flavin-dependent oxidoreductase -
  MRN59_RS03985 (MRN59_03975) - 717549..718676 (+) 1128 WP_012657167.1 cysteine desulfurase family protein -
  MRN59_RS03990 (MRN59_03980) mnmA 718688..719803 (+) 1116 WP_101140269.1 tRNA 2-thiouridine(34) synthase MnmA -
  MRN59_RS03995 (MRN59_03985) - 719864..720523 (+) 660 WP_133444979.1 tetratricopeptide repeat protein -
  MRN59_RS04000 (MRN59_03990) recD2 720526..722931 (+) 2406 WP_354680514.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MRN59_RS04005 (MRN59_03995) alaS 723178..725802 (+) 2625 WP_133444981.1 alanine--tRNA ligase -
  MRN59_RS04010 (MRN59_04000) - 725882..726127 (+) 246 WP_012657162.1 IreB family regulatory phosphoprotein -
  MRN59_RS04015 (MRN59_04005) ruvX 726120..726539 (+) 420 WP_099482912.1 Holliday junction resolvase RuvX -
  MRN59_RS04020 (MRN59_04010) - 726555..726866 (+) 312 WP_041636040.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90885.27 Da        Isoelectric Point: 4.5764

>NTDB_id=676329 MRN59_RS04000 WP_354680514.1 720526..722931(+) (recD2) [Macrococcoides caseolyticum strain 19MO06SA05]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIITHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKNQV
KEFEQSEVLMAIGELEALFEVSYAERQKDALITAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYP
IVVAAPTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPDDAQIIFVG
DQDQLPSVGPGQVFKDMIDAHIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDIKKRYNDRSFIPCTSNQIPEVIEKIV
RSAVNKGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKHELQFGDVYFRTGDKILQLVNRPEDNVFNGDIGEVT
GIFMAAENALNKDVVIVDYDGSEVTYTKADLMEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQS
LIFCGDVHAFNEGIKRIGNTRFTSFNQFLIDYFNEDEINDKKQDDQGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFI
S

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=676329 MRN59_RS04000 WP_354680514.1 720526..722931(+) (recD2) [Macrococcoides caseolyticum strain 19MO06SA05]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCTGAAGTGATTGAATCAAATGAAGATTTTGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCAGAAGGCGATACCTATACTTTTACCGGTAAGATTATAACGCATCCGAAGTATGGAAAGCAGCTCCAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGATGGTATTATTCATTATTTATCAAGTGATTTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTGCCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGTACGATTCATGATAATCAGGCGATTGAGAAAATCATG
ATTCAGCTGAATGAATTTGGGTTCGGGCCGCAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTGAAGGT
GATTAATGAATCTCCGTATCAACTCGTGATGGATATTGAAGGGATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAGCGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CATACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGCCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATAAGCTCGTTGAACATGAGAAGAACA
TCTATATTCCAAGTCTATTCTATTCTGAAACAAAAGCTGTACAAATATTGCATCGATTAATGAACCATAAGAATCAGGTG
AAAGAGTTCGAACAGTCAGAAGTATTGATGGCAATCGGAGAACTAGAAGCACTGTTTGAAGTCAGCTATGCAGAACGGCA
GAAAGATGCGCTTATTACGGCGATGAACTCTAAGCTGATGATATTAACGGGTGGGCCTGGTACAGGAAAGACGACAGTCG
TACGTGGTATTGTTAATTTATATGCCGAGCTGCATGGCTTAAGTCTAGATTATGATGACTATGACGGACAGGACTATCCG
ATTGTCGTCGCAGCACCGACTGGTCGTGCGTCAAAGCGTCTTCAGGAATCGACGGGACTTGAAGCGACGACGATACACAG
GTTAATTGGATGGACGAAAGAAAATAAACCGGACGACGTGCTGGAAACTGAAATTACAGCGAAACTGGTCATTATTGATG
AAATGTCAATGGTTGATACGTGGCTTATGTTTCAATTGATGAAGGCTGTACCAGACGATGCCCAGATTATATTTGTCGGT
GACCAGGACCAGCTTCCTTCGGTCGGTCCAGGTCAAGTATTTAAGGATATGATTGATGCACACATTATGCCTCAGATTGA
GCTGAACGAGGTGTATAGACAGCAGGAAGGTTCCTCGATTGTCGAACTAGCACATCAGATTAAGCGCAATGAACCTTTTG
ACATTAAGAAAAGATATAATGACAGAAGTTTTATACCGTGTACAAGCAACCAAATTCCGGAAGTGATTGAGAAAATTGTA
CGCAGCGCTGTGAATAAAGGGTACGATATGCGTGACATACAAGTACTCGCACCGATATATAGGGGGCCAGCAGGTATACG
TGCATTAAATAAAGTATTGCAGGAAATACTGAATCCAAGCGATGAAAACAAACATGAACTGCAGTTTGGTGATGTTTATT
TCAGAACGGGTGATAAAATTTTGCAGCTTGTCAATCGACCTGAAGATAATGTATTTAATGGTGATATCGGAGAAGTCACT
GGGATATTTATGGCAGCTGAGAATGCATTAAATAAAGATGTTGTGATTGTTGACTATGATGGCAGTGAAGTAACGTATAC
GAAAGCAGATTTAATGGAAATTACACATGCATATTGCTGTTCTATTCACAAGTCCCAAGGTTCGGAATTTCCGATAGTAA
TCATGCCTGTTGTCAATCAGTACTACAGAATGTTGCAGAAGAATATTCTGTATACGGGATTAACACGTGCAAAACAATCC
CTAATATTCTGTGGAGATGTTCACGCTTTTAATGAAGGAATTAAGCGTATCGGTAATACAAGGTTTACAAGCTTCAATCA
GTTTCTAATCGATTATTTTAACGAAGACGAAATAAATGACAAAAAGCAAGATGACCAAGGTAATATACTACCTTTCAACG
TGGGGGAGATGACTGAAGACAATATGCATCTTGTTGATCCGATGATCAATATGGAAGGTATAACACCATATGATTTTATA
AGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(343-549)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-723)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.556

100

0.511