Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG223_RS17895 Genome accession   NZ_CP109444
Coordinates   3989488..3991416 (+) Length   642 a.a.
NCBI ID   WP_329249248.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3984488..3996416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS17880 (OG223_17880) - 3985789..3986094 (+) 306 WP_019066994.1 hypothetical protein -
  OG223_RS17885 (OG223_17885) - 3986146..3987603 (+) 1458 WP_329249243.1 FGGY family carbohydrate kinase -
  OG223_RS17890 (OG223_17890) rcrP 3987755..3989488 (+) 1734 WP_329249245.1 ABC transporter ATP-binding protein Regulator
  OG223_RS17895 (OG223_17895) rcrQ 3989488..3991416 (+) 1929 WP_329249248.1 ABC transporter ATP-binding protein Regulator
  OG223_RS17900 (OG223_17900) - 3991576..3992883 (-) 1308 WP_329249251.1 RNA polymerase sigma factor -
  OG223_RS17905 (OG223_17905) dnaG 3992965..3994869 (-) 1905 WP_329249254.1 DNA primase -
  OG223_RS17910 (OG223_17910) - 3994917..3996182 (-) 1266 WP_329249257.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69574.19 Da        Isoelectric Point: 6.5866

>NTDB_id=676329 OG223_RS17895 WP_329249248.1 3989488..3991416(+) (rcrQ) [Streptomyces sp. NBC_01478]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERLTIGILLVCVVLSVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGQGIDFTSVGHVLLLALGTFLVAGLLMAVATRMVNRAVNRTMFRLREDVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHNLVKVFGRQDESAKLFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQQPDPMPSERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVAPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRAHIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=676329 OG223_RS17895 WP_329249248.1 3989488..3991416(+) (rcrQ) [Streptomyces sp. NBC_01478]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCATCCTGCTGGTGTGTGTGGTGCTCAGCGTCGGGCTGAACG
TGGTGGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGAACG
ACCAAGGCGCAGGCCCTGCAGGCGATGCGCGACCGGGGCCAGGGCTCGGTCGCGGACATGCTGAAGAGCACGGACTTCAC
GCCGGGCCAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGGGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
ATGTCGCGCCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTCCTCTCGCGCGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTACCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACGGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTCTTCGGCCGGCAGGACGAGTCGGCGAAGCTCTTCGCCGAGCAGAACGACGCGCTCTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTCGCG
GTCGTCGGCGGCCTGCGGGTCGCCTCGGGCTCACTCTCCATCGGTGACGTGCAGGCCTTCGTCCAGTACTCGCGCCAGTT
CTCGATGCCGCTCACCCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCGGCGGAACGCGTCTTCGAAC
TCCTCGACGCCGAGGAGCAGCAGCCCGACCCCATGCCGAGCGAACGCCCCGCCGAACTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGCACCGGGCCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACCCTCGTCAACCTCCTCATGCGGTTCTACGAAGTGTCCGGCGGGCGTA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGCGCCCACATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCGATCGCCGACAACATCGCGTACGGCGCGTCCCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACCGTCATCGACGACGAGGGCACGG
GCGTCAGCGCCGGTGAGAAGCAACTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTCGTCCTCGACGAG
GCGACGTCGTCGGTCGACACGCGTACGGAGGTGTTGATCCAGAAGGCCATGGCCAAACTCGCCCATGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCATGCCGAGCTGTTGGCGGCGGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAA
GTCGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388