Detailed information NTG0676299

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MRO13_RS11430
• Genome accession: NZ_CP095311
• Coordinates: 2498385..2499374 (-)
• Length: 329 a.a.
• NCBI ID: WP_350939621.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain 20CO01TI02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2496669..2498336	2498385..2499374	flank	49

Gene organization within MGE regions

Location: 2496669..2499374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRO13_RS11425 (MRO13_11370)	-	2496669..2498282 (-)	1614	WP_265495276.1	IS1634 family transposase	-
MRO13_RS11430 (MRO13_11375)	rpoS	2498385..2499374 (-)	990	WP_350939621.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37801.74 Da
• Isoelectric Point: 4.6735

>NTDB_id=676299 MRO13_RS11430 WP_350939621.1 2498385..2499374(-) (rpoS) [Vibrio metschnikovii strain 20CO01TI02]
MSISNSVTKVEDFDFDPEVINAAESDVEQLSATNLKEEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVEDVNKMLRLNERISSVDTPIGGDGDKALLDILPDSNHSDPEVS
TQDEDIRLSLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFD
PSFRSQFQN

Nucleotide

• Length: 990 bp

>NTDB_id=676299 MRO13_RS11430 WP_350939621.1 2498385..2499374(-) (rpoS) [Vibrio metschnikovii strain 20CO01TI02]
ATGAGTATCAGCAATTCAGTCACTAAAGTCGAAGATTTTGATTTTGACCCTGAAGTTATCAACGCAGCGGAGTCTGACGT
TGAGCAACTATCCGCCACTAACCTCAAAGAAGAATACGATGCATCGAGCAAAAGCTTAGATGCAACACAGATGTATTTGA
GTGAAATTGGTTTTTCACCCCTTTTAACCGCCGAAGAAGAAGTCCTTTACGCTCGACGTGCATTACGTGGTGATGAGGCC
GCGCGCAAGCGAATGATTGAAAGTAACCTACGCTTGGTGGTGAAAATCTCTCGCCGTTACAGTAACCGTGGTCTAGCGTT
GCTCGATTTGATTGAAGAAGGCAACCTAGGCTTGATCCGAGCCGTTGAAAAATTTGATCCAGAACGAGGTTTTCGTTTTT
CGACTTATGCCACGTGGTGGATTCGTCAAACCATCGAACGGGCGCTGATGAATCAAACTCGTACCATTCGTCTACCGATT
CATGTCGTCAAAGAGCTCAATATTTATTTGCGCACAGCACGTGAACTTTCACAGCGTTTGGACCATGAACCTACGGCAGA
GGAAATTGCCGCTGAGCTGGACAAGCCAGTTGAAGATGTCAATAAAATGCTACGTTTGAATGAGCGGATCAGTTCTGTTG
ATACTCCGATTGGTGGCGATGGCGATAAAGCATTGTTGGATATTCTGCCAGACTCTAATCACTCTGATCCGGAAGTATCG
ACTCAAGATGAAGATATCCGCTTATCCTTACTTAATTGGCTCGATGAGCTCAATCCAAAGCAAAAAGAAGTCTTAGCGCG
CCGTTTTGGATTACTGGGTTATGAACCTTCAACGCTGGAAGAAGTTGGGCGAGAAATTAATCTTACCCGTGAGCGAGTCA
GACAGATCCAAGTAGAAGGCTTACGTCGCCTACGCGAGATCCTCGTTAAACAAGGGCTGAATATGGAAGCTTTGTTTGAT
CCGTCATTCCGCAGCCAATTTCAGAATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.186	100	0.872