Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MRO13_RS11285 Genome accession   NZ_CP095311
Coordinates   2470183..2470701 (-) Length   172 a.a.
NCBI ID   WP_154169135.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2465183..2475701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS11265 (MRO13_11210) rpsP 2465646..2465894 (-) 249 WP_004395977.1 30S ribosomal protein S16 -
  MRO13_RS11270 (MRO13_11215) ffh 2466132..2467502 (-) 1371 WP_004395978.1 signal recognition particle protein -
  MRO13_RS11275 (MRO13_11220) - 2467715..2468509 (+) 795 WP_170904558.1 inner membrane protein YpjD -
  MRO13_RS11280 (MRO13_11225) - 2468816..2470090 (+) 1275 WP_154169133.1 CNNM domain-containing protein -
  MRO13_RS11285 (MRO13_11230) luxS 2470183..2470701 (-) 519 WP_154169135.1 S-ribosylhomocysteine lyase Regulator
  MRO13_RS11290 (MRO13_11235) gshA 2470818..2472386 (-) 1569 WP_170904559.1 glutamate--cysteine ligase -
  MRO13_RS11295 (MRO13_11240) - 2472657..2475509 (-) 2853 WP_342651734.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19012.81 Da        Isoelectric Point: 5.1825

>NTDB_id=676296 MRO13_RS11285 WP_154169135.1 2470183..2470701(-) (luxS) [Vibrio metschnikovii strain 20CO01TI02]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQAILSEKGIHTLEHLYAGFMRNHLNSEQVEIIDISP
MGCRTGFYMSLIGAPTEQQVATAWLAAMEDVLKVRDQKDIPELNEYQCGTAAMHSLSEAQAIAQQVLSSGIGVNKNDQLA
LPESMLKNLQVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=676296 MRO13_RS11285 WP_154169135.1 2470183..2470701(-) (luxS) [Vibrio metschnikovii strain 20CO01TI02]
ATGCCACTACTAGATAGCTTTACGGTTGATCATACTCGCATGCAAGCTCCCGCTGTACGGGTAGCGAAAACCATGCAAAC
CCCGAAAGGCGATACGATTACTGTATTTGACCTGCGTTTTACTCTGCCTAATCAAGCTATTTTGTCTGAAAAAGGAATTC
ATACTCTAGAGCACCTTTATGCAGGGTTCATGCGTAATCATCTTAATAGCGAACAGGTGGAAATTATTGATATTTCCCCA
ATGGGCTGTCGTACTGGATTTTATATGAGTTTGATTGGTGCACCTACCGAGCAGCAAGTGGCTACGGCGTGGTTAGCCGC
GATGGAAGATGTCTTGAAAGTGCGGGACCAAAAGGATATTCCAGAACTCAATGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCTTTATCTGAAGCACAAGCGATTGCTCAGCAAGTGTTAAGTAGCGGTATTGGGGTGAACAAAAATGATCAACTTGCT
TTACCTGAATCGATGCTAAAAAACCTACAAGTGAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.302

100

0.843