Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MRO13_RS08040 Genome accession   NZ_CP095311
Coordinates   1734294..1735736 (+) Length   480 a.a.
NCBI ID   WP_004395408.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1729294..1740736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS08015 (MRO13_07980) - 1729302..1730060 (-) 759 WP_004395403.1 SDR family oxidoreductase -
  MRO13_RS08020 (MRO13_07985) alsS 1730057..1731763 (-) 1707 WP_004395404.1 acetolactate synthase AlsS -
  MRO13_RS08025 (MRO13_07990) budA 1731796..1732581 (-) 786 WP_004395405.1 acetolactate decarboxylase -
  MRO13_RS08030 (MRO13_07995) - 1732690..1733577 (+) 888 WP_350939425.1 LysR family transcriptional regulator -
  MRO13_RS08035 (MRO13_08000) - 1733633..1734019 (+) 387 WP_350939426.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  MRO13_RS08040 (MRO13_08005) sbcB 1734294..1735736 (+) 1443 WP_004395408.1 exodeoxyribonuclease I Machinery gene
  MRO13_RS08045 (MRO13_08010) - 1735769..1736155 (+) 387 WP_115152724.1 CidA/LrgA family protein -
  MRO13_RS08050 (MRO13_08015) - 1736155..1736832 (+) 678 WP_154168373.1 CidB/LrgB family autolysis modulator -
  MRO13_RS08055 (MRO13_08020) cdd 1736996..1737883 (+) 888 WP_170905409.1 cytidine deaminase -
  MRO13_RS08060 (MRO13_08025) - 1737917..1738315 (-) 399 Protein_1548 EAL domain-containing protein -
  MRO13_RS08065 (MRO13_08030) - 1738419..1739845 (+) 1427 WP_113606171.1 IS66 family transposase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54754.07 Da        Isoelectric Point: 5.9164

>NTDB_id=676288 MRO13_RS08040 WP_004395408.1 1734294..1735736(+) (sbcB) [Vibrio metschnikovii strain 20CO01TI02]
MKNSRPHNADHQQTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITGITPQKAMA
EGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQQGNSRWDLLDVMRACHALRPEGIEWPE
NQEGFTSFKLEHLSKANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGML
GRERSYTSWVVPIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCPILAPAKTL
TAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQLYDGFFSPSDRAAMDIIRSAAPESLADLD
IQFSDQRIAPLLFRYRARHYPWTLNETEQRRWASHCQDYFATQLPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=676288 MRO13_RS08040 WP_004395408.1 1734294..1735736(+) (sbcB) [Vibrio metschnikovii strain 20CO01TI02]
TTGAAAAATTCCAGACCTCACAACGCAGATCATCAACAGACATTCTTCTTTTTAGATTATGAAACGTGGGGGACGAGCCC
AGCCAAAGATCGTCCCAGCCAGTTTGCTGGTGTGCGTACCGATATGGACTTTAATATCATTGGCGAGCCGCTGGTCATCT
ATTGTCAACTGCCCAGCGACTATTTGCCCTCACCAGAAGCCGCTTTGATAACGGGTATTACGCCACAAAAAGCGATGGCA
GAAGGGTTGCCAGAACCAGAATTTATTGCCCGCATTCATGCTGAACTGGCCACACCGAATACCACCAGTTTAGGCTATAA
CAGCATTCGTTTTGATGATGAAGTAACTCGCTATACCTGTTATCGGAATTTTATTGACCCCTACGCTTGGAGTTGGCAAC
AAGGCAACTCACGCTGGGATTTACTTGATGTGATGCGTGCTTGTCATGCTTTGCGCCCAGAAGGTATTGAATGGCCTGAA
AACCAAGAAGGCTTTACCAGTTTTAAACTGGAGCACCTTTCTAAAGCCAATGGTATAGAACACAGCAATGCTCACGATGC
GATGGCTGATGTGATTGCCACCATTGAGCTCGCAAAAAAAATCAAAGCAGCACAGCCTAAGCTGTTTGATTATTTCTTAT
CGATGCGCCATAAGCGTAAGCTGATTGATTTGGTTGATATTGTTAACATGACGCCATTAATGCATGTCTCTGGCATGCTA
GGACGTGAGCGCAGTTACACCAGTTGGGTTGTACCTATTGCTTGGCACCCCACCAATCAAAATGCCGTAATCGTGGTCGA
TTTGGCGAAAAATCCCGAGCCGTTATTCGAGTTAACCAGCGAGCAACTCTTACAGCGCCTCTATACTAAACATGATGACT
TGGCAGAGGGTGAGCTACCTGCGCCAGTTAAGTTGATTCATTTGAATAAGTGCCCCATTTTAGCCCCAGCGAAAACCCTT
ACCGCTGAAAATGCCGCCACCATAGGTATTAACCGCGAGCAGTGCTTGGCTCATCTTTCGCAAATTCGTCAACAACCAAC
ATTGCGTGAAAAGTTAGTGGATGTGTTTAGTGCTGAACGTGATTTTTCAGCCAGCAGTGATGTCGATAGCCAACTCTATG
ATGGGTTCTTTTCTCCTTCCGATCGCGCGGCAATGGACATTATTCGCTCTGCGGCGCCGGAGTCACTCGCTGACTTAGAT
ATTCAATTCAGTGATCAACGCATTGCGCCCCTGCTGTTTCGTTATCGAGCTCGTCATTATCCTTGGACACTCAATGAAAC
AGAACAGCGCCGCTGGGCAAGCCATTGTCAAGATTACTTTGCTACTCAGTTACCAAGTTATATGCTCAACTTAGAAAATT
TGGTCGAGCAACATCAACACGATGCTAAAAAAATCGCCATACTGAAAGCAGTGTATCATTATGTTGAAGCGCTGGCTTCT
TAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(216-476)

Exonuclease (RNase_T)

(17-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.064

97.917

0.794