Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG318_RS30645 Genome accession   NZ_CP109438
Coordinates   6658273..6659274 (+) Length   333 a.a.
NCBI ID   WP_190171843.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01483     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6653273..6664274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG318_RS30620 (OG318_30590) - 6653513..6654157 (+) 645 WP_266433722.1 TetR/AcrR family transcriptional regulator -
  OG318_RS30625 (OG318_30595) - 6654336..6655886 (+) 1551 WP_329367356.1 MFS transporter -
  OG318_RS30630 (OG318_30600) - 6656049..6656558 (-) 510 WP_329367358.1 MarR family transcriptional regulator -
  OG318_RS30635 (OG318_30605) - 6656737..6657498 (+) 762 WP_329373842.1 class III extradiol ring-cleavage dioxygenase -
  OG318_RS30640 (OG318_30610) - 6657564..6658103 (-) 540 WP_329367360.1 N-acetyltransferase family protein -
  OG318_RS30645 (OG318_30615) rpoS 6658273..6659274 (+) 1002 WP_190171843.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG318_RS30650 (OG318_30620) - 6659823..6660422 (+) 600 WP_329373844.1 TetR family transcriptional regulator -
  OG318_RS30655 (OG318_30625) - 6660492..6661535 (-) 1044 WP_329367363.1 YafY family protein -
  OG318_RS30660 (OG318_30630) - 6661598..6663175 (+) 1578 WP_329367365.1 MFS transporter -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37345.06 Da        Isoelectric Point: 4.9035

>NTDB_id=676257 OG318_RS30645 WP_190171843.1 6658273..6659274(+) (rpoS) [Streptomyces sp. NBC_01483]
MATRAVARRQSATGETTDAARSVRAGGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQILDDEVDAPKA
DATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=676257 OG318_RS30645 WP_190171843.1 6658273..6659274(+) (rpoS) [Streptomyces sp. NBC_01483]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACCACCGACGCGGCACGCAGTGTTCGCGCCGGAGG
CGGCGAAATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCCCAGATCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGACGAGGTGGATGCCCCCAAGGCG
GACGCGACCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGCG
GCTGGTCGTCGCCGTGGCCCGGCGATATCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACATGGTGGATCCGTCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGCCTTCCCGTGCACCTGGTCGAGGAGCTGGGCCGCATCCGCCG
GGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACCCCGG
AGCGTGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGTGACACCCAG
TTCGGTGACCTCCTCGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAGCTCGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGGGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCCCGCGACACCGGTTTTGACGCGGCGGCTTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.09

0.363