Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG318_RS01835 Genome accession   NZ_CP109438
Coordinates   395767..396438 (-) Length   223 a.a.
NCBI ID   WP_329359608.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01483     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 390767..401438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG318_RS01820 (OG318_01825) - 391820..393175 (-) 1356 WP_329359602.1 HupE/UreJ family protein -
  OG318_RS01825 (OG318_01830) - 393214..394383 (-) 1170 WP_329359604.1 DUF3500 domain-containing protein -
  OG318_RS01830 (OG318_01835) - 394924..395763 (+) 840 WP_329359606.1 hypothetical protein -
  OG318_RS01835 (OG318_01840) dinR/lexA 395767..396438 (-) 672 WP_329359608.1 transcriptional repressor LexA Regulator
  OG318_RS01840 (OG318_01845) - 397024..397518 (-) 495 WP_266578708.1 MarR family transcriptional regulator -
  OG318_RS01845 (OG318_01850) - 397640..399097 (+) 1458 WP_329359610.1 MFS transporter -
  OG318_RS01850 (OG318_01855) - 399163..399585 (+) 423 WP_329359612.1 hypothetical protein -
  OG318_RS01855 (OG318_01860) - 399762..400592 (+) 831 WP_329359614.1 M55 family metallopeptidase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24405.85 Da        Isoelectric Point: 5.3884

>NTDB_id=676202 OG318_RS01835 WP_329359608.1 395767..396438(-) (dinR/lexA) [Streptomyces sp. NBC_01483]
MDNDMPVRRGRPTGPRSVEGELTTRQGDIVRFITATVQRQGYPPSMREIGQAVQLASTSSVAYQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGRNSEAPVDVPLVGRIAAGAPLLAEEMVEDVYSLPRQVVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLEDEATVKVLRRQDGRVWLMPRNPAYEPIPGDQAQILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=676202 OG318_RS01835 WP_329359608.1 395767..396438(-) (dinR/lexA) [Streptomyces sp. NBC_01483]
ATGGACAACGACATGCCCGTACGCCGTGGTCGGCCGACGGGCCCCCGCAGCGTCGAAGGGGAATTGACAACACGCCAAGG
GGACATTGTCCGGTTCATCACCGCCACGGTTCAGCGCCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTGC
AACTCGCCAGCACGTCCTCGGTCGCCTACCAACTGATGGCCCTGGAACGCAAGGGCGTCCTCTACCGCGACCCGCACCGT
CCTCGCGCCTACCGGGTACGGCCTTCCTGGGCACCCGACCTGGGTCGCAACAGCGAGGCGCCGGTCGATGTGCCGCTCGT
CGGGCGGATCGCCGCCGGCGCGCCGTTGCTCGCGGAGGAGATGGTCGAGGACGTCTACTCCCTGCCCCGCCAGGTTGTGG
GCGACGGGGACCTGTTCGCCCTGACAGTCTCCGGTGACAGCATGATCGACGCCGCGATCTGCGACGGTGACATCGTGACC
GTGAGGCGGCAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTGGAGGACGAGGCCACCGTCAAGGTGCTGCG
TCGGCAGGACGGGCGGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCCTGGCGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCGTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.411

93.722

0.435