Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG352_RS31810 Genome accession   NZ_CP109435
Coordinates   7014525..7015304 (-) Length   259 a.a.
NCBI ID   WP_329221662.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01485     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7009525..7020304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG352_RS31795 (OG352_31800) - 7009719..7011575 (+) 1857 WP_329224038.1 IucA/IucC family protein -
  OG352_RS31800 (OG352_31805) - 7011597..7012202 (+) 606 WP_329221659.1 GNAT family N-acetyltransferase -
  OG352_RS31805 (OG352_31810) - 7012369..7014345 (+) 1977 WP_329221661.1 ATP-dependent DNA helicase -
  OG352_RS31810 (OG352_31815) dinR/lexA 7014525..7015304 (-) 780 WP_329221662.1 transcriptional repressor LexA Regulator
  OG352_RS31815 (OG352_31820) nrdR 7015885..7016454 (+) 570 WP_329221663.1 transcriptional regulator NrdR -
  OG352_RS31820 (OG352_31825) - 7016621..7019521 (+) 2901 WP_329221664.1 vitamin B12-dependent ribonucleotide reductase -
  OG352_RS31825 (OG352_31830) - 7019628..7020239 (-) 612 WP_329221666.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28067.85 Da        Isoelectric Point: 7.0666

>NTDB_id=676189 OG352_RS31810 WP_329221662.1 7014525..7015304(-) (dinR/lexA) [Streptomyces sp. NBC_01485]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEVHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASSVQATDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=676189 OG352_RS31810 WP_329221662.1 7014525..7015304(-) (dinR/lexA) [Streptomyces sp. NBC_01485]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGTGCACAAGCGCTCGCTGCCGGGCCGACCTCCAGGCATCCGCGCGGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGAGTGATCGAAGTCATCAGGGACTCCGTGCAACGGCGCGGTTATCCGCCGTCGATGCGGGAGATC
GGTCAGGCGGTCGGCCTGTCCAGCACCTCTTCGGTCGCACACCAGTTGATGGCGCTGGAACGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTGCGCGGCTCCGACCAGGCCTCCTCCGTGCAGGCCACGGACACCGCCGGCA
AGCCCGCCGCTTCGTACGTTCCGCTGGTCGGCCGGATTGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCGCGGCAACTGGTCGGCGACGGTGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACGCGGCGTACGAGCCG
ATTCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375