Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG352_RS18150 Genome accession   NZ_CP109435
Coordinates   3961508..3962506 (-) Length   332 a.a.
NCBI ID   WP_329218180.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01485     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3956508..3967506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG352_RS18135 (OG352_18145) - 3957154..3958608 (-) 1455 WP_329223877.1 MFS transporter -
  OG352_RS18140 (OG352_18150) - 3958779..3959843 (+) 1065 WP_329218179.1 YafY family protein -
  OG352_RS18145 (OG352_18155) - 3959895..3960638 (-) 744 WP_329223878.1 TetR family transcriptional regulator -
  OG352_RS18150 (OG352_18160) rpoS 3961508..3962506 (-) 999 WP_329218180.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG352_RS18155 (OG352_18165) - 3962729..3963268 (+) 540 WP_329218181.1 N-acetyltransferase family protein -
  OG352_RS18160 (OG352_18170) - 3963395..3964210 (-) 816 WP_329218182.1 class III extradiol ring-cleavage dioxygenase -
  OG352_RS18165 (OG352_18175) - 3964433..3964942 (+) 510 WP_329218183.1 MarR family transcriptional regulator -
  OG352_RS18170 (OG352_18180) - 3965025..3966569 (-) 1545 WP_329218185.1 MFS transporter -
  OG352_RS18175 (OG352_18185) - 3966812..3967462 (-) 651 WP_329218186.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37086.83 Da        Isoelectric Point: 5.0415

>NTDB_id=676153 OG352_RS18150 WP_329218180.1 3961508..3962506(-) (rpoS) [Streptomyces sp. NBC_01485]
MATRAVARRKSATGGTTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESKAD
ASRAELEALVADSERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPVEIATELGSTPERVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIDRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=676153 OG352_RS18150 WP_329218180.1 3961508..3962506(-) (rpoS) [Streptomyces sp. NBC_01485]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCACTGGTGGGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGTACACCACTGCTCGACGCCGCCAAGG
AAGTCGAATTGTCCCAGATCATCGAGGCAGGTGTGTTCGCACAGCAGGTCCTCGACGGCGACGAGGAGTCCAAGGCGGAC
GCCTCCCGCGCGGAGCTCGAAGCCCTGGTCGCCGACAGCGAGCGGGCGAAGGACGTGTTCATCCGTTCCAACCTCCGCCT
GGTCGTCGCGGTCGCCCGCCGCTACCCCCGCAGCGGTCTTCCCCTCCTTGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTCGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGAACGGCCGCGACCCGGAGCCCGTCGAGATCGCGACCGAGCTCGGCTCCACGCCGGAGC
GCGTCACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTCGACGACCAGGGTGAGACACAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCGGAACAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTGGACGG
CCTGATCGACCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAACACGGCCTGACAAGGGAACGCATCCGCCAGATCGAAAAGCACGCCCTCCTGGAACTGAAG
AAACTGGCCCGCGACACGGGATTCGAGGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361