Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG352_RS13980 Genome accession   NZ_CP109435
Coordinates   3030203..3032131 (+) Length   642 a.a.
NCBI ID   WP_329217090.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01485     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025203..3037131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG352_RS13965 (OG352_13975) - 3026341..3026646 (+) 306 WP_329217087.1 YtxH domain-containing protein -
  OG352_RS13970 (OG352_13980) - 3026861..3028315 (+) 1455 WP_329217088.1 FGGY family carbohydrate kinase -
  OG352_RS13975 (OG352_13985) rcrP 3028470..3030203 (+) 1734 WP_329217089.1 ABC transporter ATP-binding protein Regulator
  OG352_RS13980 (OG352_13990) rcrQ 3030203..3032131 (+) 1929 WP_329217090.1 ABC transporter ATP-binding protein Regulator
  OG352_RS13985 (OG352_13995) - 3032194..3033432 (-) 1239 WP_329223819.1 RNA polymerase sigma factor -
  OG352_RS13990 (OG352_14000) dnaG 3033548..3035443 (-) 1896 WP_329217091.1 DNA primase -
  OG352_RS13995 (OG352_14005) - 3035484..3036749 (-) 1266 WP_329217092.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69546.87 Da        Isoelectric Point: 5.2005

>NTDB_id=676142 OG352_RS13980 WP_329217090.1 3030203..3032131(+) (rcrQ) [Streptomyces sp. NBC_01485]
MAGPMGRMMGAAGPESRTLDFKVSGRRLLAYFKPERFTLYAMLASVVLSVGLSVVGPKILGQATDLVFAGIIGREMPAGA
SKEQVLDSMRARGEGSVADMLRSTDFTPGQGIDFDQVGRVLLFAIVVFLVSGLLMAVGTRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSLGQLVNSLLTIIGVLAMMFWVSWILALVALVTVPLSAVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAEQFAEQNDALYEAGFRAQYNSGVMQPLMMFISNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVAAQRPAELRGLVSLE
GVSFRYDPQKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRIALDGVDIATMSRDDLRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=676142 OG352_RS13980 WP_329217090.1 3030203..3032131(+) (rcrQ) [Streptomyces sp. NBC_01485]
ATGGCCGGGCCCATGGGGCGCATGATGGGCGCCGCCGGTCCCGAGAGCCGCACGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGCGTACTTCAAGCCGGAACGGTTCACCCTCTACGCGATGCTGGCCAGCGTGGTGCTCAGCGTCGGCCTCAGCG
TGGTCGGGCCGAAGATCCTCGGCCAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGCCGGGAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTGCTCGACTCGATGCGGGCGCGCGGCGAGGGCAGTGTCGCCGACATGCTCCGCAGCACCGACTTCAC
GCCGGGCCAGGGCATCGACTTCGACCAGGTCGGCCGGGTCCTGCTGTTCGCGATCGTCGTGTTCCTCGTCTCCGGTCTGC
TGATGGCGGTGGGGACGCGCCTGGTCAACCGGGCCGTCAACCGGACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCGCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGCTGGGCCAGCTCGTCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGATCCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGCGGTCGTCGCCACGCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGTCA
CACGCTGGTGAAGGTGTTCGGCCGCCAGGACGAGTCCGCCGAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAGGGCGCAGTACAACAGCGGGGTCATGCAGCCGCTGATGATGTTCATCTCGAACCTCAACTACGTGCTGGTCGCG
GTCGTCGGCGGGCTGCGCGTCGCGTCGGGCGCGCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGGCGGCGCAGCGGCCCGCGGAGCTGCGCGGGCTGGTGTCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGCAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTGAACCTCCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCGCCCTCGACGGCGTCGACATCGCCACGATGTCCCGCGACGACCTGCGCGCCGGCATCGGCATGGTCCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCCACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCGCCCACGCCGAGCTGCTCGCGGCCGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(45-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.472

92.368

0.374