Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG352_RS13975 Genome accession   NZ_CP109435
Coordinates   3028470..3030203 (+) Length   577 a.a.
NCBI ID   WP_329217089.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01485     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3023470..3035203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG352_RS13945 (OG352_13955) - 3024077..3025660 (+) 1584 WP_329217086.1 site-specific integrase -
  OG352_RS13965 (OG352_13975) - 3026341..3026646 (+) 306 WP_329217087.1 YtxH domain-containing protein -
  OG352_RS13970 (OG352_13980) - 3026861..3028315 (+) 1455 WP_329217088.1 FGGY family carbohydrate kinase -
  OG352_RS13975 (OG352_13985) rcrP 3028470..3030203 (+) 1734 WP_329217089.1 ABC transporter ATP-binding protein Regulator
  OG352_RS13980 (OG352_13990) rcrQ 3030203..3032131 (+) 1929 WP_329217090.1 ABC transporter ATP-binding protein Regulator
  OG352_RS13985 (OG352_13995) - 3032194..3033432 (-) 1239 WP_329223819.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62312.60 Da        Isoelectric Point: 6.1892

>NTDB_id=676141 OG352_RS13975 WP_329217089.1 3028470..3030203(+) (rcrP) [Streptomyces sp. NBC_01485]
MLIRLLRTYLRPYRKPITLLVLLQLLQTCATLYLPTLNAHIIDKGVVEGDTGYILSFGGVMIGVSLAQVVCNIGAVYYGA
RTASALGRDLRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSSV
LVAVVPVLGICVTVIVLRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTDISLKSGNLLAL
MFPVVMTTVSLSSIAVVWFGAHRIDAGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PLAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAVELVALPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVA
DVDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGTHTALMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676141 OG352_RS13975 WP_329217089.1 3028470..3030203(+) (rcrP) [Streptomyces sp. NBC_01485]
GTGCTCATACGACTGCTGAGGACCTACCTCAGGCCCTACCGAAAACCCATCACCCTGCTGGTGCTGCTGCAGCTGCTGCA
GACCTGCGCCACCCTCTACCTGCCCACACTCAACGCCCACATCATCGACAAGGGCGTCGTCGAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGGCGTGATGATCGGCGTCTCGCTGGCGCAGGTGGTGTGCAACATCGGCGCCGTGTACTACGGCGCC
AGGACCGCCTCCGCGCTCGGCCGGGACCTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCCCGTGAGGTCGG
TCACTTCGGCGCGCCCTCGTTGATCACACGGACGACGAACGACGTCCAGCAGATCCAGATGCTCGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCCCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGACTCGACGTGCCGCTGTCCTCCGTG
CTGGTCGCCGTGGTGCCGGTGCTGGGCATCTGCGTGACGGTGATCGTGCTCCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACGCCGACCTCACGGACATCTCGCTGAAGTCCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAGCCTGTCGTCGATCGCGGTGGTCTGGTTCGGGGCCCATCGGATCGACGCCGG
CGGGATGCAGATCGGTGATCTGACCGCCTTCCTCGCCTATCTCATGCAGATCGTCATGTCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACGTCGTCGAGCGTCGTGCCG
CCGCTGGCGCCCGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGGGGGGCGGGCTTCCGCTATCCCGGCGCCGA
GGAGCCCGTCCTGAAGGCCGTGGAGCTCGTGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTGCTCGTCGACGGGGTGGCCGTCGCG
GACGTCGATCCGGTGCTGCTGGCGAAGACCGTGGGGCTCGTGCCGCAGAAGCCGTACCTGTTCGCGGGGACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAGCAAGCTGGAGAACGGGCTGGACTCCCCCATCTCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGTACGCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCACGCACACCGCGCTCATGGCGGGCAAC
GAGACCTATCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.609

97.574

0.386