Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG310_RS24460 Genome accession   NZ_CP109427
Coordinates   5815450..5817183 (-) Length   577 a.a.
NCBI ID   WP_329458011.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01497     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5810450..5822183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG310_RS24445 (OG310_24450) - 5811686..5812844 (+) 1159 Protein_4823 RNA polymerase sigma factor -
  OG310_RS24450 (OG310_24455) - 5813012..5813182 (-) 171 WP_329458009.1 hypothetical protein -
  OG310_RS24455 (OG310_24460) rcrQ 5813519..5815450 (-) 1932 WP_329458010.1 ABC transporter ATP-binding protein Regulator
  OG310_RS24460 (OG310_24465) rcrP 5815450..5817183 (-) 1734 WP_329458011.1 ABC transporter ATP-binding protein Regulator
  OG310_RS24465 (OG310_24470) - 5817468..5819000 (-) 1533 WP_329458012.1 FGGY family carbohydrate kinase -
  OG310_RS24470 (OG310_24475) - 5819107..5819409 (-) 303 WP_329458013.1 YtxH domain-containing protein -
  OG310_RS24490 (OG310_24495) - 5820266..5821432 (-) 1167 WP_329458014.1 glycosyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62885.01 Da        Isoelectric Point: 7.2097

>NTDB_id=676103 OG310_RS24460 WP_329458011.1 5815450..5817183(-) (rcrP) [Streptomyces sp. NBC_01497]
MLLRLLRTHLAPYRRPIGLLVALQLLQTVATLYLPTLNADIIDNGVVSGDSGYILEFGAIMLAVSVGQVLCNMGAVYYGA
RTASSVGRDVRSAVFHRVQSFSAREVSHFGAPTLITRTTNDVQQIQMLTLMSFTLMVSAPIMCVGGIIMALSQDVPLSSI
LLAVVPVLALAVSLIVRRMRPLFRQMQKKLDSVNRVLREQITGNRVIRAFVRDDYEQGRFKTANTEVSQLQLSTGRLMSL
MFPTVMTVVNLSSIAVVWFGAHRIDGGHMQIGALTAFLSYLMQIVMAVMMATFMFIMVPRAEVCAERIEEVLSTDSSVVP
PLSPVRELRAHGHLEIRDVDFRYPGAEESVLKAVTLAARPGETTAVIGSTGSGKSTLLSLVPRLMDVTTGQILVDGQDVR
ELEARLLAKTVSLVPQKPYLFAGTIATNLRYGNPDATDEELWHALEVAQAKEFVTKLEGGLDAPVAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAQATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHAELMASN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676103 OG310_RS24460 WP_329458011.1 5815450..5817183(-) (rcrP) [Streptomyces sp. NBC_01497]
GTGCTCCTACGACTTCTACGGACCCACCTCGCTCCGTACAGACGACCGATCGGTCTGCTGGTGGCGCTTCAGCTGCTCCA
GACCGTCGCCACCCTCTACCTCCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAGCGGTGACTCGGGCTACA
TCCTGGAGTTCGGCGCGATCATGCTCGCCGTCTCCGTCGGCCAGGTGCTGTGCAACATGGGCGCCGTGTACTACGGAGCG
CGTACGGCGTCGTCGGTGGGGCGTGACGTGCGCTCCGCCGTCTTCCACCGGGTGCAGAGCTTCTCCGCCCGTGAGGTGAG
CCACTTCGGGGCACCCACGCTGATCACCCGGACCACCAACGACGTGCAGCAGATACAGATGCTGACACTCATGTCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCAGCCAGGACGTGCCGCTGTCGTCGATC
CTGCTGGCCGTGGTGCCCGTGCTCGCGCTCGCGGTGAGCCTGATCGTGCGCAGGATGCGGCCGCTGTTCCGGCAGATGCA
GAAGAAGCTGGACAGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTACGAGCAGGGGCGCTTCAAGACCGCCAACACCGAGGTGTCCCAACTGCAGTTGTCGACGGGCCGCCTGATGTCGCTG
ATGTTCCCGACGGTGATGACGGTGGTCAACCTGTCGTCGATCGCCGTGGTCTGGTTCGGCGCGCACCGTATCGACGGCGG
TCACATGCAGATCGGCGCGCTGACCGCGTTCCTGTCGTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACGTTCA
TGTTCATCATGGTGCCGCGGGCCGAGGTCTGCGCCGAGCGTATCGAGGAGGTGCTGTCCACCGACTCCAGCGTCGTACCG
CCGCTGAGCCCGGTGCGGGAGCTGCGCGCCCACGGCCACCTGGAGATCAGGGACGTCGACTTCCGCTATCCCGGCGCCGA
GGAATCCGTACTCAAGGCGGTGACCCTCGCCGCGCGGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCGACCCTGCTCTCCCTCGTACCGCGGCTGATGGACGTCACGACGGGCCAGATCCTGGTGGACGGGCAGGACGTGCGC
GAACTGGAGGCGCGGCTCCTGGCGAAGACCGTGAGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGGACGATCGCGAC
CAACCTGCGGTACGGCAACCCCGACGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCACCAAGCTGGAGGGCGGTCTCGACGCGCCGGTCGCCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGGCTT
TCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGTGCCGCGCTCGCGCGGGAGACCGCGCAGGCGACGGTGGTGATCGTCGCGCAGCGCGTGTCGACGATCA
GGGACGCCGACCGGATCGTGGTGCTGGACGAGGGCCGCGTGGTCGGCACGGGCCGCCACGCGGAGCTGATGGCGTCCAAC
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.234

99.307

0.419