Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG310_RS24455 Genome accession   NZ_CP109427
Coordinates   5813519..5815450 (-) Length   643 a.a.
NCBI ID   WP_329458010.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01497     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5808519..5820450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG310_RS24440 (OG310_24445) dnaG 5809411..5811351 (+) 1941 WP_329458008.1 DNA primase -
  OG310_RS24445 (OG310_24450) - 5811686..5812844 (+) 1159 Protein_4823 RNA polymerase sigma factor -
  OG310_RS24450 (OG310_24455) - 5813012..5813182 (-) 171 WP_329458009.1 hypothetical protein -
  OG310_RS24455 (OG310_24460) rcrQ 5813519..5815450 (-) 1932 WP_329458010.1 ABC transporter ATP-binding protein Regulator
  OG310_RS24460 (OG310_24465) rcrP 5815450..5817183 (-) 1734 WP_329458011.1 ABC transporter ATP-binding protein Regulator
  OG310_RS24465 (OG310_24470) - 5817468..5819000 (-) 1533 WP_329458012.1 FGGY family carbohydrate kinase -
  OG310_RS24470 (OG310_24475) - 5819107..5819409 (-) 303 WP_329458013.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69852.47 Da        Isoelectric Point: 6.4232

>NTDB_id=676102 OG310_RS24455 WP_329458010.1 5813519..5815450(-) (rcrQ) [Streptomyces sp. NBC_01497]
MSGAGPGRMMGAGAPAQRSADFKGSAKRLLRRLTQYRSALVAMIAATVVSVGLSVEGPRILGKATDLIFAGVIGRSMPQG
STKAQAIAELRTRGQGSVADLLSGVDFVPGHGIDFDKIGTTLLTALLVYLAAGLLMLVAQRMSIRIINRTVYRMRQDIQA
KLARLPLSYFDRQRRGEVLSRATNDVDNLAQTMQQTMGQMVNSLLTIVGVIVMMFWISWLLALVALVTVPLSVLVATRIG
KRSQPQFVQQWRVTGKLNAHIEEMYTGHSLVKTFGRQEESAAAFEEQNELLYEAAFKAQFNSGIMQPLMMFISNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQEPDGPERKMLTPPRGRVAL
EKVAFRYDPEKPLIEDLSLAVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVSAGRITLDGVDVRDMTREQLRSGIGMVLQD
TWLFGGTIAENIAYGASREVSREEVEEAARAAHADRFVRTLPEGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLTAGGAYARLYQAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=676102 OG310_RS24455 WP_329458010.1 5813519..5815450(-) (rcrQ) [Streptomyces sp. NBC_01497]
ATGAGCGGCGCAGGACCCGGGCGGATGATGGGGGCCGGCGCGCCCGCACAGCGCTCCGCGGACTTCAAGGGGTCGGCGAA
GCGTCTGCTGCGGCGGCTGACGCAGTACCGGTCGGCGCTGGTGGCGATGATCGCGGCGACCGTGGTGAGCGTGGGCCTGT
CGGTGGAGGGGCCGAGGATCCTCGGCAAGGCCACCGACCTGATCTTCGCGGGTGTCATCGGCCGCTCTATGCCCCAGGGC
TCGACGAAGGCGCAGGCGATCGCGGAACTGCGCACGCGCGGCCAGGGCTCGGTCGCGGACCTGTTGTCGGGTGTCGACTT
CGTGCCGGGGCACGGCATCGACTTCGACAAGATCGGGACGACGCTGCTGACGGCGCTGCTGGTCTACCTGGCGGCGGGGC
TGCTGATGCTGGTGGCGCAGCGGATGTCGATCCGGATCATCAACCGCACCGTGTACCGGATGCGGCAGGACATCCAGGCG
AAGCTGGCCCGCCTGCCGCTGTCGTACTTCGACCGGCAGCGGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACGTGGA
CAACCTCGCGCAGACGATGCAGCAGACGATGGGGCAGATGGTCAACTCGCTGCTGACGATCGTCGGCGTCATCGTGATGA
TGTTCTGGATCTCGTGGCTGCTGGCGCTGGTCGCGCTGGTCACCGTGCCGCTGTCGGTGCTGGTGGCGACGAGGATCGGC
AAGCGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCGTCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACGGG
GCATTCGCTGGTGAAGACGTTCGGCCGGCAGGAGGAGTCCGCCGCCGCGTTCGAGGAACAGAACGAGCTGCTGTACGAGG
CGGCGTTCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCATCTCGAACCTCAACTACGTGCTGGTC
GCGGTCGTCGGCGGCCTCAGGGTGGCGTCGGGCGCGCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCA
GTTCTCGCAGCCCCTCACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTGGCGTCGGCCGAGCGGATCTTCG
AGTTGCTGGACGCCGAGGAGCAGGAGCCGGACGGCCCGGAGCGCAAGATGCTCACCCCGCCGCGCGGCCGGGTCGCACTG
GAGAAGGTCGCGTTCCGCTACGACCCGGAGAAGCCGCTGATCGAAGACCTGTCGCTGGCGGTCGAGCCCGGTCAGACGGT
CGCGATCGTCGGCCCCACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGTCGGCAGGGC
GGATCACGCTCGACGGCGTCGACGTGCGGGACATGACCCGCGAGCAACTGCGCTCCGGGATAGGGATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGAACGATCGCGGAGAACATCGCGTACGGGGCCTCCCGCGAGGTGTCGCGGGAAGAGGTCGAGGA
GGCGGCGCGTGCCGCGCACGCGGACCGCTTCGTGCGCACGCTGCCCGAGGGCTACGACACGGTGCTCGACGACGAGGGCT
CGGGCGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGAC
GAGGCGACGAGCTCGGTGGACACCCGTACGGAGGTCCTCATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCAGGACGAG
CTTCGTGATCGCGCACCGGCTGTCCACCATCCGCGACGCGGACGTGATCCTCGTGATGGAGAGCGGCTCGATCGTGGAGC
AGGGGACGCACGAGGAACTGCTCACGGCGGGCGGCGCGTACGCGCGTCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(60-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.283

96.734

0.409