Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG310_RS08445 Genome accession   NZ_CP109427
Coordinates   1998339..1999130 (+) Length   263 a.a.
NCBI ID   WP_329455264.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01497     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993339..2004130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG310_RS08435 (OG310_08430) - 1994120..1997026 (-) 2907 WP_329455262.1 vitamin B12-dependent ribonucleotide reductase -
  OG310_RS08440 (OG310_08435) nrdR 1997174..1997689 (-) 516 WP_329455263.1 transcriptional regulator NrdR -
  OG310_RS08445 (OG310_08440) dinR/lexA 1998339..1999130 (+) 792 WP_329455264.1 transcriptional repressor LexA Regulator
  OG310_RS08450 (OG310_08445) - 1999441..2001411 (-) 1971 WP_329455265.1 ATP-dependent DNA helicase -
  OG310_RS08455 (OG310_08450) - 2001584..2003377 (-) 1794 WP_329460078.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28578.36 Da        Isoelectric Point: 7.0667

>NTDB_id=676068 OG310_RS08445 WP_329455264.1 1998339..1999130(+) (dinR/lexA) [Streptomyces sp. NBC_01497]
MTTTADSAAITAQDHSARRFEPVHTVTEPVTTDQEGLAKPARSLPGRPPGIRADSTGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPTTQQTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=676068 OG310_RS08445 WP_329455264.1 1998339..1999130(+) (dinR/lexA) [Streptomyces sp. NBC_01497]
GTGACCACGACCGCCGACAGCGCCGCCATCACCGCGCAGGACCATTCCGCGCGCCGATTCGAGCCCGTGCACACCGTGAC
GGAACCCGTCACCACGGACCAGGAGGGCCTCGCCAAGCCCGCCCGGTCCCTGCCCGGCCGACCTCCCGGAATCCGGGCCG
ACAGCACAGGACTCACGGACCGTCAGCGCCGGGTCATCGAAGTCATCCGCGACTCCGTGCAGCGCAGGGGATACCCGCCC
TCGATGCGCGAGATCGGTCAGGCGGTCGGCCTGTCGAGCACCTCGTCCGTCGCGCACCAGCTGATGGCGTTGGAGCGCAA
GGGATTCCTCCGTCGCGACCCGCACCGGCCTCGCGCCTACGAGGTCCGCGGCTCCGACCAGCCCACCACCCAGCAGACGG
ACACCACGGGCAAGCCCGCCGCGTCCTACGTCCCCCTCGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTGGCGGAGGAA
TCCGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTGGGTGACGGCGAGCTGTTCGTACTCAAGGTCGTGGGCGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTGACGGTGCGACGCCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CCGCGATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCCGCCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAATGCC
GCCTACCAGCCGATCCCCGGTGACGAAGCGACCATCCTCGGCAAGGTCGTGGCGGTCCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376