Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG329_RS30630 Genome accession   NZ_CP109422
Coordinates   6818328..6820091 (+) Length   587 a.a.
NCBI ID   WP_405799626.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01506     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6813328..6825091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG329_RS30600 (OG329_30585) - 6813933..6814712 (+) 780 WP_405799620.1 sulfite exporter TauE/SafE family protein -
  OG329_RS30605 (OG329_30590) - 6814715..6815338 (-) 624 WP_405799621.1 class F sortase -
  OG329_RS30610 (OG329_30595) - 6815508..6816029 (-) 522 WP_405799622.1 hypothetical protein -
  OG329_RS30615 (OG329_30600) - 6816330..6817103 (-) 774 WP_405799623.1 aminotransferase class IV -
  OG329_RS30620 (OG329_30605) soxR 6817123..6817578 (-) 456 WP_405799624.1 redox-sensitive transcriptional activator SoxR -
  OG329_RS30625 (OG329_30610) - 6817632..6818315 (+) 684 WP_405799625.1 NADPH-dependent FMN reductase -
  OG329_RS30630 (OG329_30615) rcrP 6818328..6820091 (+) 1764 WP_405799626.1 ABC transporter ATP-binding protein Regulator
  OG329_RS30635 (OG329_30620) rcrQ 6820088..6821968 (+) 1881 WP_405799627.1 ABC transporter ATP-binding protein Regulator
  OG329_RS30640 (OG329_30625) cutA 6821989..6822327 (+) 339 WP_405799628.1 divalent-cation tolerance protein CutA -
  OG329_RS30645 (OG329_30630) - 6822711..6823664 (-) 954 WP_405802104.1 IS481 family transposase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 62839.98 Da        Isoelectric Point: 6.8622

>NTDB_id=676036 OG329_RS30630 WP_405799626.1 6818328..6820091(+) (rcrP) [Streptomyces sp. NBC_01506]
MLIRLLGAQLRPYRGLLALAVVLQLIQTLATLYLPTLNADIINNGVLRGETGHILSSGVVMIAVTVLQITSAGAAVYVGA
RVAMGVGRDLRSAVFSRVQDFSAREMSHFGTASLITRTTNDVQQVQTLTVIALTVLVAAPLTWVGGIVMAVNQDPPLALL
LLVFIPLLGGVVGLILLRMPTLFRGMQERIDNVNRMMREQITGIRVIRAFVRDEHEQERYGGANRELMTVALRVGRLMAL
VMPSVILVWELATVTIIWFGGHRINSGDLQAGSLIAFLSYLMQILMAVMMTLFLMMQVPRAAVSAERIQEVLDTESSVVP
PSPSVSASVTALHGPRGEPGRLEIRGAGFSYPGAEEPVLTGIDLTAAAGRTTAVIGSTGSGKTTLLNLVPRLFDATAGDV
RIGGVDVRDMDPAALARTVGLVPQKPYLFSGTVASNLRYGKPNATDDELWQALETAQAREFVAALPEGLDAPVSQGGGNL
SGGQRQRLAIARVLVAKPALYLFDDSFSALDYTTDAALRVALAEETRATGATVVIVAQRVSTIRGADRIVVLDQGRVVGT
GGHEQLMRDNHTYREIVLSQLSEEEAA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=676036 OG329_RS30630 WP_405799626.1 6818328..6820091(+) (rcrP) [Streptomyces sp. NBC_01506]
ATGCTGATCCGACTGCTCGGCGCCCAACTGCGCCCGTACAGAGGGCTGCTCGCCCTCGCCGTCGTGCTGCAACTGATCCA
GACCCTGGCCACCCTCTATCTGCCCACCCTCAACGCCGACATCATCAACAACGGCGTCCTGCGCGGCGAGACGGGCCACA
TCCTGTCCTCCGGAGTCGTGATGATCGCCGTCACCGTGCTCCAGATCACCAGCGCCGGAGCCGCCGTCTACGTCGGCGCC
CGCGTCGCCATGGGCGTCGGCCGTGATCTGCGGTCCGCCGTCTTCTCCCGCGTACAGGACTTCTCCGCACGGGAGATGAG
CCACTTCGGCACCGCCTCGCTGATCACCCGCACCACCAACGACGTGCAGCAGGTGCAGACGCTCACCGTCATCGCCCTGA
CCGTGCTCGTCGCCGCGCCGCTGACCTGGGTGGGCGGCATCGTGATGGCCGTCAACCAGGACCCGCCGCTCGCACTGCTC
CTGCTGGTCTTCATTCCCCTCCTCGGCGGAGTGGTCGGACTGATCCTGCTGCGTATGCCGACGCTCTTCCGAGGGATGCA
GGAGCGCATCGACAACGTCAACCGGATGATGCGCGAGCAGATCACCGGCATCCGGGTGATCAGGGCCTTCGTCCGGGACG
AGCACGAGCAGGAGCGGTACGGCGGTGCGAACCGGGAGCTGATGACCGTCGCGCTGCGCGTCGGCAGGCTGATGGCGCTG
GTGATGCCGTCCGTCATCCTCGTCTGGGAGCTGGCGACCGTCACGATCATCTGGTTCGGCGGACACCGGATCAACTCCGG
TGATCTGCAAGCCGGTTCGCTGATCGCCTTCCTGAGCTATCTGATGCAGATCCTGATGGCCGTGATGATGACGCTGTTCC
TGATGATGCAGGTGCCGCGTGCCGCCGTGAGCGCCGAACGCATCCAGGAGGTCCTGGACACCGAGTCGAGCGTCGTCCCG
CCGTCCCCCTCGGTGTCCGCGTCCGTGACGGCGCTGCACGGCCCTCGCGGCGAACCCGGCCGACTCGAGATACGGGGAGC
CGGTTTCAGCTACCCCGGTGCCGAGGAACCGGTACTGACCGGCATCGACCTGACGGCGGCCGCGGGGCGTACCACCGCCG
TCATCGGCTCCACGGGCAGCGGCAAGACGACCCTGCTCAATCTGGTGCCGAGACTCTTCGACGCCACGGCCGGCGACGTA
CGGATCGGGGGAGTCGACGTACGGGACATGGACCCGGCGGCGCTCGCCCGCACCGTCGGCCTCGTCCCGCAGAAGCCATA
CCTCTTCTCCGGCACCGTCGCCTCCAACCTCCGTTACGGGAAGCCGAACGCGACCGACGACGAGCTGTGGCAGGCCCTGG
AGACCGCGCAGGCACGGGAGTTCGTCGCCGCGCTGCCCGAAGGGCTCGACGCCCCCGTCTCGCAGGGCGGCGGCAACCTC
TCCGGCGGACAGCGCCAACGCCTCGCCATCGCACGGGTGTTGGTGGCGAAACCGGCCCTGTATCTGTTCGACGACTCCTT
CTCCGCGCTCGACTACACGACCGACGCGGCGCTGCGCGTCGCGCTGGCCGAGGAGACCCGGGCCACCGGCGCGACCGTGG
TGATCGTCGCGCAGCGGGTGTCCACCATCCGTGGCGCGGACCGGATCGTCGTCCTCGACCAGGGGCGGGTCGTCGGCACC
GGCGGCCACGAACAGCTCATGCGGGACAACCACACCTACCGGGAGATCGTCCTCTCCCAGCTCAGCGAGGAGGAAGCCGC
ATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(360-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.227

92.504

0.363