Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NOS3756_RS25810 Genome accession   NZ_AP017295
Coordinates   6199031..6200545 (-) Length   504 a.a.
NCBI ID   WP_067774648.1    Uniprot ID   -
Organism   Nostoc sp. NIES-3756     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6194031..6205545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS3756_RS25795 (NOS3756_53230) - 6194444..6194668 (-) 225 WP_067774639.1 type II toxin-antitoxin system MqsA family antitoxin -
  NOS3756_RS25800 (NOS3756_53240) - 6195046..6197688 (-) 2643 WP_067774642.1 protein kinase -
  NOS3756_RS31495 (NOS3756_53250) - 6197813..6197950 (+) 138 WP_193789886.1 hypothetical protein -
  NOS3756_RS25805 (NOS3756_53260) - 6198117..6198893 (-) 777 WP_082727327.1 Uma2 family endonuclease -
  NOS3756_RS25810 (NOS3756_53270) radA 6199031..6200545 (-) 1515 WP_067774648.1 DNA repair protein RadA Machinery gene
  NOS3756_RS25815 (NOS3756_53280) - 6200722..6201450 (+) 729 WP_067774651.1 response regulator transcription factor -
  NOS3756_RS25820 (NOS3756_53290) - 6201580..6202233 (+) 654 WP_067774654.1 cofactor assembly of complex C subunit B -
  NOS3756_RS25825 (NOS3756_53300) - 6202293..6202943 (+) 651 WP_067774656.1 Uma2 family endonuclease -
  NOS3756_RS25830 (NOS3756_53310) - 6202968..6203486 (+) 519 WP_067774658.1 DUF456 family protein -
  NOS3756_RS25835 (NOS3756_53320) - 6203488..6204369 (+) 882 WP_067776236.1 DUF4351 domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54257.03 Da        Isoelectric Point: 4.7764

>NTDB_id=67601 NOS3756_RS25810 WP_067774648.1 6199031..6200545(-) (radA) [Nostoc sp. NIES-3756]
MPKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNGKAVKPAKPRASLTFDQITDR
QIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKTLSV
VGEDSEESEQTDQLSIAEGAGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALMKV
AKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVQNGLREVPNPSELF
LGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGLN
VEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGQKFPDFDIEILPVAK
VIDAIIAAIPHQELTDDDLEMDEE

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=67601 NOS3756_RS25810 WP_067774648.1 6199031..6200545(-) (radA) [Nostoc sp. NIES-3756]
ATGCCAAAGCCGAAAACCTTTTACATTTGTAACGAATGTGGTGCAGAATCTCCCCAATGGTTTGGTAAGTGTCCTGCTTG
TGGTACTTACAACTCTCTAGAAGAACAGATTACCATCCAATCCTCAGTAGATGTACCGAAAGGGGGTGTCAGTGGTTGGC
ACGCATCACAAAACAATGGTAAAGCAGTCAAGCCAGCAAAACCACGAGCTTCATTAACATTTGACCAAATCACCGATCGC
CAAATTGCACGTTGGGAGTCTGGCTATGGAGAACTGGATCGGGTGCTTGGTGGTGGTGTAGTTCCTGGGTCTATGGTGTT
AATTGGTGGTGATCCTGGTATTGGTAAATCTACTTTATTACTACAAGTCTCAAACCAACTAGCGCAGAGATATCGTATCC
TTTATGTAACTGGCGAAGAATCAGGGCAGCAAGTCAAATTAAGAGCTTCTCGCTTGGGTGTAGCAAAAACCTTAAGCGTT
GTCGGAGAAGATAGTGAGGAGTCAGAACAGACAGATCAATTATCAATAGCTGAAGGTGCAGGTGCAGATTTATACGTCCT
GCCAGAGACAGATTTAGAAGAGATTTTACGAGAAGTCGATTCTCTTAAACCCAATGTGGCAGTAATCGACAGTATTCAAA
CAGTATTTTTCCCTGCGCTTACTTCTGCACCCGGTTCAGTCGCCCAGGTGAGGGAATGTACAGCCGCCTTGATGAAAGTG
GCAAAACATGAAGACATCACCATGTTAATTGTCGGACACGTTACTAAAGAAGGGGCGATCGCCGGGCCAAAAGTATTAGA
ACACCTAGTAGATACGGTACTGTATTTTGAAGGCGATCGCTTCGCCTCCCATCGCTTGTTACGCACCGTGAAAAACCGCT
TCGGTGCAACTCACGAAATCGGCATCTTTGAAATGGTGCAGAACGGACTCCGTGAAGTCCCTAACCCCAGTGAGTTATTT
TTAGGCAACCGTGATGACCCAGCACCGGGTACAGCAATTGTAGTTGCATGTGAAGGTACACGCCCGATTGTCGTCGAGTT
ACAAGCCTTAGTCAGCCCTACTAGTTACCCATCACCAAGACGTGCTGGGACTGGTATAGATTACAATCGCTTAGTGCAGA
TACTCGCCGTATTAGAAAAGCGTGTAGGCATACCCATGTCAAAACTAGATTCCTACGTCGCCTCGGCTGGGGGGCTAAAT
GTAGAAGAACCAGCCGTAGATTTAGGTATAGCCATTGCCATCGTCGCCAGTTTCCGCGATCGCATCGTTGATCCAGGTAC
AGTATTGATAGGTGAAGTCGGCTTAGGTGGACAGGTACGATCAGTTTCCCAGATGGAACTAAGGTTAAAAGAAGCAGCTA
AACTGGGATTTAAACGTGCGATCGTTCCCAAGGGTCAAAAATTCCCCGACTTTGACATCGAAATTTTACCAGTTGCCAAA
GTCATAGACGCAATTATCGCCGCCATCCCCCATCAAGAATTGACAGACGACGATTTAGAGATGGACGAAGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(399-464)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(88-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.408

97.222

0.49
  radA Streptococcus mitis SK321

46.107

96.825

0.446
  radA Streptococcus mitis NCTC 12261

47.845

92.063

0.44
  radA Streptococcus pneumoniae Rx1

47.845

92.063

0.44
  radA Streptococcus pneumoniae D39

47.845

92.063

0.44
  radA Streptococcus pneumoniae R6

47.845

92.063

0.44
  radA Streptococcus pneumoniae TIGR4

47.845

92.063

0.44

Multiple sequence alignment