Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUU74_RS07860 Genome accession   NZ_CP095185
Coordinates   1626931..1628280 (-) Length   449 a.a.
NCBI ID   WP_245144073.1    Uniprot ID   -
Organism   Chryseobacterium daecheongense strain F23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621931..1633280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU74_RS07840 (MUU74_07890) - 1622910..1623488 (-) 579 WP_245144442.1 HupE/UreJ family protein -
  MUU74_RS07845 (MUU74_07895) - 1623578..1624060 (+) 483 WP_245144067.1 DUF6702 family protein -
  MUU74_RS07850 (MUU74_07900) - 1624543..1625136 (-) 594 WP_245144069.1 ACP phosphodiesterase -
  MUU74_RS07855 (MUU74_07905) - 1625216..1626784 (-) 1569 WP_245144071.1 M12 family metallo-peptidase -
  MUU74_RS07860 (MUU74_07910) radA 1626931..1628280 (-) 1350 WP_245144073.1 DNA repair protein RadA Machinery gene
  MUU74_RS07865 (MUU74_07915) - 1628411..1630018 (+) 1608 WP_245144075.1 CTP synthase -
  MUU74_RS07870 (MUU74_07920) yidC 1630194..1631993 (+) 1800 WP_245144077.1 membrane protein insertase YidC -
  MUU74_RS07875 (MUU74_07925) - 1632106..1632690 (-) 585 WP_245144079.1 ribonuclease HII -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49844.41 Da        Isoelectric Point: 6.6949

>NTDB_id=676000 MUU74_RS07860 WP_245144073.1 1626931..1628280(-) (radA) [Chryseobacterium daecheongense strain F23]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEIIEKPSHKSLPSSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTEIQNPNCFLFTETSLEKILHEAKKL
EPDFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVAQGLREIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQAEQRISEAEKLGYEKIFISNLNKISKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=676000 MUU74_RS07860 WP_245144073.1 1626931..1628280(-) (radA) [Chryseobacterium daecheongense strain F23]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAGAACTGCGGTACCCAATATTCCCAATGGATGGGACAATGCAAGAATTG
CGGACAATGGAATACTTTAGTAGAGGAAATCATAGAAAAACCTTCTCATAAAAGCCTTCCTTCTTCGAAATCAAAACAAC
ACGTCATTAATATCATTGAAGTTGAAACGAGTGAGGAACCAAGAATTAAAACCCCTTCCGAAGAGCTTAACCGTGTGTTG
GGTGGAGGCATCGTTTTAGGTTCCGTAACTTTAATCGGAGGAGAACCAGGAATTGGAAAATCTACCCTTCTTCTTCAGCT
TGCTTTGAAAATGAAGAAAAAGATCTTTTATGTTTCGGGGGAAGAAAGTGCGTCTCAGATCAAAATGAGAGCAGACCGAT
TAACGGAGATTCAAAATCCTAATTGTTTTCTCTTCACGGAAACCTCATTGGAGAAAATTCTTCACGAAGCCAAAAAGCTG
GAACCGGATTTCATCATTATAGATTCTATACAGACTTTGCAATCACAGCTTATTGAAAGTTCTCCGGGAACTGTTTCCCA
GATCAGAGAATGTTCCAATGAGATCATTAAATATGCTAAAGAAAATAACACCCCTGTTTTTCTTGTAGGTCATATTACTA
AAGACGGACAAATTGCCGGACCAAAAGTTCTGGAACACATGGTAGATGTCGTTCTGAATTTTGATGGAGACAGAAATCAC
CTTTTCAGGTTACTGAGGGCTAATAAAAATCGTTTTGGCTCTACTTCCGAAATCGGGATCTATGAAATGGTTGCACAAGG
ATTGAGAGAAATCAAAAACCCTTCTGAAATTTTGATCACCAAAAAATTTGAAGAGCTTTCCGGAAATTCTGTTGCAGTAA
CATTAGAAGGAAACCGCCCGATGCTATTGGAAATTCAGGCATTGGTGAGTACTGCCGTTTATGGAACTCCACAAAGAAGT
TCAACAGGTTTTGATGCAAAAAGATTAAATATGCTTTTAGCCGTTCTGGAAAAAAGAGCGGGATTCCAGCTTGGCGCTAA
AGACGTTTTCCTAAATATCACAGGTGGAATAAAAACGGACGATCCTGCTTTAGATCTCGCTGTTGTGGCTTCCATACTTT
CTTCCAATGAAGATATTGCGATCTCGGAACATTTTTGCTTTGCCGGAGAAATCGGTCTGAGTGGTGAAATTCGTCCGATT
GCACAAGCTGAGCAAAGAATTTCCGAAGCTGAAAAACTGGGATATGAGAAAATTTTCATTTCTAACCTTAATAAAATTTC
TAAGAAGAAATTCGGAATTAAAATTGAAGAGGTAAGTAAAATTGAAGATTTCCATGAAAGGCTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus mitis NCTC 12261

47.588

100

0.483
  radA Streptococcus pneumoniae Rx1

47.588

100

0.483
  radA Streptococcus pneumoniae D39

47.588

100

0.483
  radA Streptococcus pneumoniae R6

47.588

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.588

100

0.483
  radA Streptococcus mitis SK321

47.368

100

0.481