Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MUY32_RS07920 Genome accession   NZ_CP095180
Coordinates   1688939..1689565 (+) Length   208 a.a.
NCBI ID   WP_021240856.1    Uniprot ID   A0AB35EUS1
Organism   Enterobacter roggenkampii strain Ek140     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683939..1694565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY32_RS07900 (MUY32_07900) - 1684336..1686096 (-) 1761 WP_023343697.1 Lon protease family protein -
  MUY32_RS07905 (MUY32_07905) matP 1686283..1686735 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  MUY32_RS07910 (MUY32_07910) ompA 1686802..1687857 (-) 1056 WP_008499928.1 porin OmpA -
  MUY32_RS07915 (MUY32_07915) sulA 1688212..1688721 (-) 510 WP_032637628.1 SOS-induced cell division inhibitor SulA -
  MUY32_RS07920 (MUY32_07920) sxy/tfoX 1688939..1689565 (+) 627 WP_021240856.1 TfoX/Sxy family DNA transformation protein Regulator
  MUY32_RS07925 (MUY32_07925) yccS 1689522..1691684 (-) 2163 WP_248224835.1 YccS family putative transporter -
  MUY32_RS07930 (MUY32_07930) - 1691704..1692150 (-) 447 WP_008499924.1 YccF domain-containing protein -
  MUY32_RS07935 (MUY32_07935) helD 1692274..1694328 (+) 2055 WP_021240854.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23914.49 Da        Isoelectric Point: 9.6030

>NTDB_id=675956 MUY32_RS07920 WP_021240856.1 1688939..1689565(+) (sxy/tfoX) [Enterobacter roggenkampii strain Ek140]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=675956 MUY32_RS07920 WP_021240856.1 1688939..1689565(+) (sxy/tfoX) [Enterobacter roggenkampii strain Ek140]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567