Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG700_RS16100 Genome accession   NZ_CP109419
Coordinates   3519481..3520893 (+) Length   470 a.a.
NCBI ID   WP_405614082.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3514481..3525893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG700_RS16080 (OG700_16020) - 3514524..3515486 (-) 963 WP_405614074.1 sugar phosphate isomerase/epimerase family protein -
  OG700_RS16085 (OG700_16025) - 3515683..3516621 (-) 939 WP_405614076.1 Ppx/GppA family phosphatase -
  OG700_RS16090 (OG700_16030) - 3516661..3517491 (+) 831 WP_405614078.1 hypothetical protein -
  OG700_RS16095 (OG700_16035) - 3517532..3519325 (-) 1794 WP_405614080.1 BACON domain-containing protein -
  OG700_RS16100 (OG700_16040) radA/sms 3519481..3520893 (+) 1413 WP_405614082.1 DNA repair protein RadA Machinery gene
  OG700_RS16105 (OG700_16045) disA 3520938..3522071 (+) 1134 WP_078075735.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG700_RS16110 (OG700_16050) - 3522161..3522937 (-) 777 WP_405614085.1 hypothetical protein -
  OG700_RS16115 (OG700_16055) - 3523182..3523787 (+) 606 Protein_3200 phosphatase PAP2 family protein -
  OG700_RS16120 (OG700_16060) - 3524140..3525051 (+) 912 WP_405614087.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49512.68 Da        Isoelectric Point: 8.2438

>NTDB_id=675937 OG700_RS16100 WP_405614082.1 3519481..3520893(+) (radA/sms) [Streptomyces sp. NBC_01508]
MAVARTKSAKDRPSYRCTECGWTTVKWLGRCPECQAWGTVEEYGAPAVRTTAVGRVSTPALPIGQIDGRTATARSTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASSEHRTLYVTGEESASQVRLRADRIKAIDDNLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRTSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDKPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPTNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKIPAGMKVTEVADMGAALSVLPRRGRAQAPRDGEDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=675937 OG700_RS16100 WP_405614082.1 3519481..3520893(+) (radA/sms) [Streptomyces sp. NBC_01508]
ATGGCTGTCGCCCGTACGAAATCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAGTGCGGTTGGACGACCGTCAAGTG
GCTCGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACGGCGGTCG
GCCGGGTCAGCACCCCGGCCCTCCCGATCGGCCAGATCGACGGCCGGACGGCGACGGCCCGCTCGACGGGCGTGGACGAG
CTGGACCGCGTCCTCGGCGGCGGTCTGGTGCCGGGAGCGGTCGTGCTGGTGGCCGGTGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTCCTGGACGTCGCGGCGAAGGCGGCCAGCTCCGAGCACCGCACGCTCTATGTGACGGGCGAGGAGTCGGCGAGCC
AGGTGCGGCTGCGCGCGGACCGCATCAAGGCCATCGACGACAACCTCTATCTCGCGGCCGAGACGGACCTGTCCGCCGTC
CTCGGACATCTCGACGCGGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTCCAGACGGTGGCGTCGCCGGAGATCGACGG
CGCGCCCGGCGGTATGGCCCAGGTCCGGGAGGTCGCCGGCGCGCTCATCCGCACCTCGAAGGAGCGGGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGGCTGCGGCTCGTGCGGGGCGTCAAGAACAGGTACGGCACGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGGGACAAGCCGGTCC
CCGGCACCTGTCTCACCGTCACGCTCGAAGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCGTCCCCCCGGCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTCGAACAGCGCGG
CCGGATCAGCGCGCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCGGCCGCGGACC
TGGCGATCGCCCTGGCCCTGGCCTCGGCGGCGAGCGACACCCCGCTGCCGACGAATCTTGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGACGGGTCACCGGGGTCCAGCGCAGACTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCCCT
CGTCCCGACCGACCCGGGGAAGATCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGGGCCGCTCTGAGCGTGC
TTCCGCGCCGGGGTCGCGCCCAGGCCCCACGGGACGGCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus pneumoniae Rx1

44.393

91.064

0.404
  radA Streptococcus pneumoniae D39

44.393

91.064

0.404
  radA Streptococcus pneumoniae R6

44.393

91.064

0.404
  radA Streptococcus pneumoniae TIGR4

44.393

91.064

0.404
  radA Streptococcus mitis SK321

44.393

91.064

0.404
  radA Streptococcus mitis NCTC 12261

44.393

91.064

0.404