Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG700_RS08060 Genome accession   NZ_CP109419
Coordinates   1822266..1823051 (+) Length   261 a.a.
NCBI ID   WP_405611051.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01508     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817266..1828051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG700_RS08045 (OG700_08020) - 1817358..1817885 (+) 528 WP_405611042.1 TerD family protein -
  OG700_RS08050 (OG700_08025) - 1818083..1820977 (-) 2895 WP_405611045.1 vitamin B12-dependent ribonucleotide reductase -
  OG700_RS08055 (OG700_08030) nrdR 1821225..1821734 (-) 510 WP_405611048.1 transcriptional regulator NrdR -
  OG700_RS08060 (OG700_08035) dinR/lexA 1822266..1823051 (+) 786 WP_405611051.1 transcriptional repressor LexA Regulator
  OG700_RS08065 (OG700_08040) - 1823200..1825170 (-) 1971 WP_405611054.1 ATP-dependent DNA helicase -
  OG700_RS08070 (OG700_08045) - 1825209..1826990 (-) 1782 WP_405621522.1 IucA/IucC family protein -
  OG700_RS08075 (OG700_08050) - 1827192..1827932 (-) 741 WP_405611057.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28338.12 Da        Isoelectric Point: 7.4239

>NTDB_id=675916 OG700_RS08060 WP_405611051.1 1822266..1823051(+) (dinR/lexA) [Streptomyces sp. NBC_01508]
MTTTADSAIITAQDRSQSRLEPVHAMNEAATNPEGVKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLIGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNAAY
QPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=675916 OG700_RS08060 WP_405611051.1 1822266..1823051(+) (dinR/lexA) [Streptomyces sp. NBC_01508]
GTGACCACCACCGCAGACAGCGCCATCATTACCGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGAAGCAGCCACGAATCCGGAGGGCGTAAAGCCCACTCGCTCGCTGCCCGGCCGACCTCCTGGAATCCGGGCGGACAGCT
CCGGTCTCACGGACCGGCAGCGACGGGTCATCGAAGTCATCCGCGACTCCGTGCAGCGGCGGGGATATCCGCCGTCGATG
CGCGAGATCGGCCAGGCCGTCGGCCTGTCCAGCACATCCTCCGTCGCCCATCAGTTGATGGCTCTGGAGCGCAAGGGATT
CCTCCGCAGGGACCCGCACCGGCCGAGGGCGTACGAGGTCCGGGGCTCCGACCAGCCGAGCACCCAGCAGACGGACACGA
CCGGCAAACCCGCCGCGTCGTACGTGCCGTTGATCGGCCGGATCGCGGCAGGCGGGCCGATCCTCGCCGAGGAGTCCGTC
GAGGACGTGTTCCCGCTGCCCCGCCAACTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGATGAT
CGAAGCCGCGATCTGCGACGGCGACTGGGTGACGGTCCGCCGTCAGCCGGTGGCCGAGAACGGGGACATCGTGGCCGCGA
TGCTGGACGGCGAAGCCACCGTCAAGCGCTTCCGGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCCGGCGACGACGCGACGATCCTCGGCAAGGTTGTGGCGGTCCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379