Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR930_RS06575 Genome accession   NZ_AP022351
Coordinates   1367893..1368498 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E138     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1362893..1373498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR930_RS06545 (RIMDOsaka138_12580) rsmS 1363595..1363759 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  GR930_RS06550 (RIMDOsaka138_12590) priC 1363773..1364300 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  GR930_RS06555 (RIMDOsaka138_12600) ybaN 1364370..1364747 (+) 378 WP_001188900.1 DUF454 family protein -
  GR930_RS06560 (RIMDOsaka138_12610) apt 1364900..1365451 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GR930_RS06565 (RIMDOsaka138_12620) dnaX 1365580..1367511 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  GR930_RS06570 (RIMDOsaka138_12630) ybaB 1367564..1367893 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GR930_RS06575 (RIMDOsaka138_12640) recR 1367893..1368498 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GR930_RS06580 (RIMDOsaka138_12650) htpG 1368608..1370482 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  GR930_RS06585 (RIMDOsaka138_12660) adk 1370663..1371307 (+) 645 WP_001220233.1 adenylate kinase -
  GR930_RS06590 (RIMDOsaka138_12670) hemH 1371439..1372401 (+) 963 WP_001250114.1 ferrochelatase -
  GR930_RS06595 (RIMDOsaka138_12680) aes 1372398..1373357 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67588 GR930_RS06575 WP_001195025.1 1367893..1368498(+) (recR) [Escherichia coli strain E138]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67588 GR930_RS06575 WP_001195025.1 1367893..1368498(+) (recR) [Escherichia coli strain E138]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment