Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   MUY23_RS08965 Genome accession   NZ_CP095162
Coordinates   1836826..1838616 (-) Length   596 a.a.
NCBI ID   WP_245133655.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS75     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1831826..1843616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS08945 - 1832633..1833535 (-) 903 WP_002938141.1 ABC transporter permease -
  MUY23_RS08950 opp4B 1833549..1834505 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  MUY23_RS08955 - 1834507..1835448 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  MUY23_RS08960 - 1835451..1836449 (-) 999 WP_002938146.1 ABC transporter ATP-binding protein -
  MUY23_RS08965 oppA 1836826..1838616 (-) 1791 WP_245133655.1 oligopeptide ABC transporter substrate-binding protein Regulator
  MUY23_RS08970 pbp3 1838829..1840070 (+) 1242 WP_002938148.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  MUY23_RS08975 sufB 1840344..1841759 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  MUY23_RS08980 sufU 1842109..1842549 (-) 441 WP_002938153.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65811.87 Da        Isoelectric Point: 4.6638

>NTDB_id=675850 MUY23_RS08965 WP_245133655.1 1836826..1838616(-) (oppA) [Streptococcus suis strain TJS75]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLINELTENTTDST
FGGFVDISMFGYDGERKLDDSGLAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYI
SFNLGKYDEAANKNVMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDPAID
MYAGGWSTGYDPNPSGLWGSVAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=675850 MUY23_RS08965 WP_245133655.1 1836826..1838616(-) (oppA) [Streptococcus suis strain TJS75]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTAATGAGTTGACTGAAAATACGACTGACTCAACA
TTTGGTGGTTTTGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAAAAAATCACAATTAGCTTGACAGGCAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGCATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGACCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTTTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGTTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATCTTGGTAAATATGACGAAGCAGCTAATAAGAACGTTATGGATGAAAAGGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGCAAATCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGGGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGCGTTCAAAATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTACAACTCAGTTCAAGCTAATGATCCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCAAGTGGTCTATGGGGGTCTGTCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.477

100

0.965