Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG407_RS37020 Genome accession   NZ_CP109416
Coordinates   8175800..8176579 (-) Length   259 a.a.
NCBI ID   WP_366493388.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01515     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8170800..8181579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG407_RS37010 (OG407_37000) - 8172232..8173212 (+) 981 WP_405863988.1 GNAT family N-acetyltransferase -
  OG407_RS37015 (OG407_37005) - 8173648..8175630 (+) 1983 WP_405863990.1 ATP-dependent DNA helicase -
  OG407_RS37020 (OG407_37010) dinR/lexA 8175800..8176579 (-) 780 WP_366493388.1 transcriptional repressor LexA Regulator
  OG407_RS37025 (OG407_37015) nrdR 8177144..8177695 (+) 552 WP_399396853.1 transcriptional regulator NrdR -
  OG407_RS37030 (OG407_37020) - 8177860..8180754 (+) 2895 WP_405863993.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28028.70 Da        Isoelectric Point: 6.9855

>NTDB_id=675812 OG407_RS37020 WP_366493388.1 8175800..8176579(-) (dinR/lexA) [Streptomyces sp. NBC_01515]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGQKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=675812 OG407_RS37020 WP_366493388.1 8175800..8176579(-) (dinR/lexA) [Streptomyces sp. NBC_01515]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACAAAAGCGCTCCCTGCCGGGCCGACCTCCCGGTATCCGGGCGGACAGCTCGGGGCTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGCTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACATCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTTCGCGGCAGCGACCAGTCCTCGTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTACCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAACTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGTGACATCGTGGCCGCCATGCTGG
AGGGCGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCGGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCAGTACTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375