Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LNL76_RS02965 Genome accession   NZ_CP095161
Coordinates   590521..592986 (+) Length   821 a.a.
NCBI ID   WP_110479454.1    Uniprot ID   A0AAE5WI81
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585521..597986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS02945 - 586528..587748 (-) 1221 WP_110479451.1 divalent metal cation transporter -
  LNL76_RS02950 thiE 587749..588411 (-) 663 WP_110479452.1 thiamine phosphate synthase -
  LNL76_RS02955 thiD 588404..589222 (-) 819 WP_110479453.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LNL76_RS02960 thiM 589234..590037 (-) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  LNL76_RS02965 rec2 590521..592986 (+) 2466 WP_110479454.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LNL76_RS02970 msbA 593205..594953 (+) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LNL76_RS02975 lpxK 594969..595979 (+) 1011 WP_110479455.1 tetraacyldisaccharide 4'-kinase -
  LNL76_RS02980 - 596154..596336 (+) 183 WP_035685738.1 Trm112 family protein -
  LNL76_RS02985 kdsB 596333..597115 (+) 783 WP_110479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 821 a.a.        Molecular weight: 92370.89 Da        Isoelectric Point: 9.7230

>NTDB_id=675785 LNL76_RS02965 WP_110479454.1 590521..592986(+) (rec2) [Avibacterium paragallinarum strain ZJ-C]
MNIGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGIAVVGCGVAYWIKHQGIAKFFAYGAIFVLCLADFHYQAQQ
LLQQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEG
GFDRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLI
AISGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQ
YFQRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKRILRWCVALLHLQLG
LLLVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGAFSSWQGANELAEKITIFLSNWQHKWIDLSQTQ
SQWIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFILDRTLAKWKCRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLV
THFRQPDWRLETLDVGQGLATLIVKEQRGILYDTGAAWQNGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLR
AYPNATLITSSEKIERKTHRTSCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFI
YKAGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQIRLSFLAKKPP
PENISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2466 bp        

>NTDB_id=675785 LNL76_RS02965 WP_110479454.1 590521..592986(+) (rec2) [Avibacterium paragallinarum strain ZJ-C]
ATGAACATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTTCCGCAATC
TTTTTTGCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTGCGGTGGTGGGCTGTGGTGTTGCCTATTGGATTAAGC
ATCAAGGGATAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAG
CTCTTACAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGTATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCA
GCAAGATTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAA
GGGCGGAAAAAGTGGCAGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGG
GGATTTGATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGA
GGATTTTTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGG
CGTTAGGGTTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATC
GCTATTTCAGGGCTACATATTGGCTTGGCAATGTTGCTCGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGAC
CTATTGGATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTA
TTCCCACCCTGCGGGCGTTGGTAGCATTGGGACTGGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAA
TATTTTCAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTGGG
AGCAGTGGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTTAGGCAGG
ATCGCCCGTTCTCTTTAGGGGCAATAATCGGTAAGCGCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGC
TTATTGTTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGC
TGTACCGTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCGCATTTTCTTCTTGGCAAG
GAGCAAATGAATTGGCAGAAAAGATCACCATTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAA
TCGCAATGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTC
GCTGAATAGGCAAAAATCCATTCCGTTCATTCTAGATCGCACTTTGGCAAAATGGAAATGTAGGTTAAACCCTGACAAAA
TCCCCTCAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTA
ACCCATTTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTGAAAGAGCA
GCGGGGGATTTTGTACGATACGGGGGCGGCTTGGCAAAATGGCAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGC
GGCAGGGCATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGG
GCTTATCCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTCTTGTTTCGCGGGAAC
GCAATGGCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGT
GCGTGCTGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATT
TACAAGGCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAAC
CTTGCAACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTT
TGCAAGCACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCGCCTTTCTTTTTTAGCCAAGAAACCACCG
CCTGAAAATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(215-497)

Metallo-beta-lactamase superfamily (Lactamase_B)

(574-756)

Domain of unknown function (DUF4131) (DUF4131)

(35-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.399

93.91

0.492