Detailed information NTG0675776

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG407_RS22605
• Genome accession: NZ_CP109416
• Coordinates: 5088882..5089880 (-)
• Length: 332 a.a.
• NCBI ID: WP_365305699.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01515
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5083882..5094880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG407_RS22585 (OG407_22555)	-	5084627..5084938 (-)	312	WP_405860615.1	hypothetical protein	-
OG407_RS22590 (OG407_22560)	-	5085065..5086600 (-)	1536	WP_405860617.1	MFS transporter	-
OG407_RS22595 (OG407_22565)	-	5086703..5087683 (+)	981	WP_405860619.1	helix-turn-helix transcriptional regulator	-
OG407_RS22600 (OG407_22570)	-	5087708..5088460 (-)	753	WP_405860621.1	TetR/AcrR family transcriptional regulator	-
OG407_RS22605 (OG407_22575)	rpoS	5088882..5089880 (-)	999	WP_365305699.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG407_RS22610 (OG407_22580)	-	5090094..5090624 (+)	531	WP_405860623.1	GNAT family N-acetyltransferase	-
OG407_RS22615 (OG407_22585)	-	5090652..5091455 (-)	804	WP_318016916.1	class III extradiol ring-cleavage dioxygenase	-
OG407_RS22620 (OG407_22590)	-	5091596..5092123 (+)	528	WP_405860626.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG407_RS22625 (OG407_22595)	-	5092235..5093794 (-)	1560	WP_405860628.1	MFS transporter	-
OG407_RS22630 (OG407_22600)	-	5093934..5094578 (-)	645	WP_366496892.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37208.01 Da
• Isoelectric Point: 5.5872

>NTDB_id=675776 OG407_RS22605 WP_365305699.1 5088882..5089880(-) (rpoS) [Streptomyces sp. NBC_01515]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ATRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELESTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide

• Length: 999 bp

>NTDB_id=675776 OG407_RS22605 WP_365305699.1 5088882..5089880(-) (rpoS) [Streptomyces sp. NBC_01515]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTTGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCACCCGCGCCGAGCTCGAAGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGGGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGAGTCGACCCCGGAGC
GCGTGACCAACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTGCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGCTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	90.06	0.361