Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MU410_RS15100 Genome accession   NZ_CP095155
Coordinates   3074596..3075225 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Iso00041     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069596..3080225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU410_RS15085 helD 3069838..3071892 (-) 2055 WP_001295354.1 DNA helicase IV -
  MU410_RS15090 yccF 3072015..3072461 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MU410_RS15095 yccS 3072471..3074633 (+) 2163 WP_000875058.1 YccS family putative transporter -
  MU410_RS15100 sxy/tfoX 3074596..3075225 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MU410_RS15105 sulA 3075444..3075953 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MU410_RS15110 ompA 3076310..3077350 (+) 1041 WP_000750416.1 porin OmpA -
  MU410_RS15115 matP 3077426..3077878 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MU410_RS15120 ycbZ 3078064..3079824 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=675773 MU410_RS15100 WP_000839153.1 3074596..3075225(-) (sxy/tfoX) [Escherichia coli strain Iso00041]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=675773 MU410_RS15100 WP_000839153.1 3074596..3075225(-) (sxy/tfoX) [Escherichia coli strain Iso00041]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1