Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG407_RS20085 Genome accession   NZ_CP109416
Coordinates   4540546..4541613 (+) Length   355 a.a.
NCBI ID   WP_405859855.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01515     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4535546..4546613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG407_RS20070 (OG407_20055) - 4536526..4537446 (-) 921 WP_365300761.1 carbohydrate ABC transporter permease -
  OG407_RS20075 (OG407_20060) - 4537461..4538453 (-) 993 WP_403588389.1 carbohydrate ABC transporter permease -
  OG407_RS20080 (OG407_20065) - 4538734..4540053 (-) 1320 WP_405859853.1 ABC transporter substrate-binding protein -
  OG407_RS20085 (OG407_20070) cytR 4540546..4541613 (+) 1068 WP_405859855.1 LacI family DNA-binding transcriptional regulator Regulator
  OG407_RS20090 (OG407_20075) - 4541725..4543149 (+) 1425 WP_405859857.1 GH1 family beta-glucosidase -
  OG407_RS20095 (OG407_20080) - 4543236..4543850 (+) 615 WP_405859859.1 DUF5753 domain-containing protein -
  OG407_RS20100 (OG407_20085) hutH 4544067..4545680 (+) 1614 WP_405859861.1 histidine ammonia-lyase -
  OG407_RS20105 (OG407_20090) - 4545728..4546429 (+) 702 WP_405859863.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37964.09 Da        Isoelectric Point: 6.5821

>NTDB_id=675770 OG407_RS20085 WP_405859855.1 4540546..4541613(+) (cytR) [Streptomyces sp. NBC_01515]
MSPAEQPPPRADVRRPTLNAVAALAGVGRGTVSRVINGSPKVSAHARAAVERAIDELGYVPNPAARSLATRRTDSVAVVV
PEGEDRLFSEPYFSGIIRGVSAQLAIAQMQLLLVLTPDEKEYARLATYLSAHRVDGVLILAVHSGDTLPDRLHELAVPTV
LAGRRGHGEPLGHVRADNNGGARIAVEHLLAKGRRTIATITGPLDMDAAQARLDGYREALEEAGRTVDEDLIAYGDFREE
GGRAAMRELLRRRPGLDAVFAASDVMASGAVLELRASGLRVPDDVAVVGFDDSIVARHIDPPLTSVRQPLEEMGRTMASL
LLDEIARRGGGHHQGADGDHRQVVLPTRLVVRESA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=675770 OG407_RS20085 WP_405859855.1 4540546..4541613(+) (cytR) [Streptomyces sp. NBC_01515]
ATGAGCCCTGCCGAGCAGCCGCCCCCGCGCGCGGACGTCCGGCGCCCGACGCTCAACGCCGTGGCCGCGCTCGCCGGCGT
CGGCCGCGGCACGGTCTCCCGGGTCATCAACGGCTCCCCCAAGGTGAGCGCCCACGCCCGCGCGGCCGTGGAGCGGGCGA
TCGACGAACTCGGCTACGTCCCCAACCCCGCCGCCCGCTCCCTGGCCACCCGCCGTACCGACTCGGTCGCCGTGGTCGTC
CCCGAGGGCGAGGACCGGCTCTTCTCCGAGCCCTACTTCTCAGGGATCATCCGCGGTGTTTCGGCCCAGCTCGCCATCGC
GCAGATGCAGTTGCTGCTGGTACTGACACCGGACGAGAAGGAGTACGCACGGCTGGCCACCTACCTGTCGGCACACCGGG
TGGACGGCGTGCTCATCCTCGCGGTCCACAGCGGCGACACGCTGCCCGACCGGCTGCACGAACTCGCCGTGCCGACCGTG
CTCGCCGGCCGGCGCGGCCACGGGGAGCCGCTGGGGCACGTCCGCGCGGACAACAACGGCGGCGCCAGGATCGCGGTCGA
GCACCTGCTGGCCAAGGGCCGCCGGACCATCGCCACCATCACGGGCCCCCTGGACATGGACGCCGCCCAGGCCCGACTCG
ACGGCTACCGCGAGGCGTTGGAGGAGGCGGGCCGCACCGTCGACGAGGACCTGATCGCGTACGGCGACTTCCGCGAGGAG
GGCGGACGCGCGGCCATGCGGGAGCTGCTGCGCCGGCGCCCCGGCCTCGACGCCGTCTTCGCCGCGTCCGACGTGATGGC
GTCCGGTGCCGTGCTGGAACTACGCGCGTCCGGCCTGCGGGTGCCTGACGACGTGGCCGTCGTCGGCTTCGACGACTCGA
TCGTGGCCCGGCACATCGATCCCCCGCTGACCAGCGTCCGCCAGCCGCTGGAGGAGATGGGCCGCACCATGGCGAGCCTC
CTGCTGGACGAGATCGCCCGCCGCGGGGGCGGTCACCACCAAGGGGCCGACGGCGATCACCGCCAAGTGGTCCTGCCGAC
ACGGCTGGTGGTGCGGGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(17-62)

Periplasmic binding protein-like domain (Peripla_BP_3)

(186-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.318

96.62

0.361