Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG407_RS17970 Genome accession   NZ_CP109416
Coordinates   4065057..4066985 (+) Length   642 a.a.
NCBI ID   WP_405859235.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01515     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4060057..4071985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG407_RS17955 (OG407_17940) - 4061224..4061529 (+) 306 WP_403598354.1 YtxH domain-containing protein -
  OG407_RS17960 (OG407_17945) - 4061703..4063160 (+) 1458 WP_328683519.1 FGGY family carbohydrate kinase -
  OG407_RS17965 (OG407_17950) rcrP 4063324..4065057 (+) 1734 WP_405859233.1 ABC transporter ATP-binding protein Regulator
  OG407_RS17970 (OG407_17955) rcrQ 4065057..4066985 (+) 1929 WP_405859235.1 ABC transporter ATP-binding protein Regulator
  OG407_RS17975 (OG407_17960) - 4067212..4068522 (-) 1311 WP_405859237.1 RNA polymerase sigma factor -
  OG407_RS17980 (OG407_17965) dnaG 4068604..4070508 (-) 1905 WP_405859239.1 DNA primase -
  OG407_RS17985 (OG407_17970) - 4070556..4071821 (-) 1266 WP_405859241.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69633.22 Da        Isoelectric Point: 6.3635

>NTDB_id=675765 OG407_RS17970 WP_405859235.1 4065057..4066985(+) (rcrQ) [Streptomyces sp. NBC_01515]
MAGPMGRMMAGTGPDARSMDFKESGKRLIGQFRPERLTIGLLLVCVVISVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALGTFMVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQLFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQKPDPMPSERPEELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=675765 OG407_RS17970 WP_405859235.1 4065057..4066985(+) (rcrQ) [Streptomyces sp. NBC_01515]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGAGTCCGGCAAACG
GCTGATCGGCCAGTTCCGGCCGGAGCGGCTGACCATCGGCCTGCTGCTGGTGTGTGTGGTGATCAGCGTGGGGCTGAACG
TGGTGGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGGGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCACCTCGGTGGGGCATGTGCTGCTGCTCGCGCTGGGCACGTTCATGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGCCTCCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCTCCCGCGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGCCAGGACGAGTCGGCGCAGCTGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTACTGGTGGCG
GTGGTAGGCGGCCTGCGCGTCGCGTCCGGCTCACTCTCCATCGGTGACGTCCAGGCCTTCGTCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCCGCCGAACGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGAAGCCCGACCCGATGCCGAGCGAACGCCCGGAGGAACTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGTTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACCCTCGTCAACCTGCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCTCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCGGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGTACGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTCCTCGACGAG
GCGACGTCTTCGGTTGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCCAAACTCGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGTTCGATCGTCGAACAGG
GCGCGCACGCGGATCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388