Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG407_RS17965 Genome accession   NZ_CP109416
Coordinates   4063324..4065057 (+) Length   577 a.a.
NCBI ID   WP_405859233.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01515     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4058324..4070057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG407_RS17935 (OG407_17920) - 4059002..4060042 (+) 1041 WP_405859230.1 CBS domain-containing protein -
  OG407_RS17955 (OG407_17940) - 4061224..4061529 (+) 306 WP_403598354.1 YtxH domain-containing protein -
  OG407_RS17960 (OG407_17945) - 4061703..4063160 (+) 1458 WP_328683519.1 FGGY family carbohydrate kinase -
  OG407_RS17965 (OG407_17950) rcrP 4063324..4065057 (+) 1734 WP_405859233.1 ABC transporter ATP-binding protein Regulator
  OG407_RS17970 (OG407_17955) rcrQ 4065057..4066985 (+) 1929 WP_405859235.1 ABC transporter ATP-binding protein Regulator
  OG407_RS17975 (OG407_17960) - 4067212..4068522 (-) 1311 WP_405859237.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62705.98 Da        Isoelectric Point: 5.7461

>NTDB_id=675764 OG407_RS17965 WP_405859233.1 4063324..4065057(+) (rcrP) [Streptomyces sp. NBC_01515]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAAVGRDIRGAIFDKVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PVAPVFELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMTDN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=675764 OG407_RS17965 WP_405859233.1 4063324..4065057(+) (rcrP) [Streptomyces sp. NBC_01515]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGGGACACCGGATACA
TCCTGTCGTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTACGGCGCG
CGCACCGCCGCGGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACAAGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CCCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTGGTGCCGACGCTGACGATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCGCACCGGATCGCGAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACGGAGAGCAGTGTCGTGCCG
CCGGTGGCCCCCGTCTTCGAGCTGCGCCGGCACGGGCATCTGGAGGTCCGCGGGGTCGGCTTCTGTTACCCGGGTGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGGCTGGTTGACGCGACCGACGGCGAGGTCCTCGTCGACGGGGTCGACGTGTCG
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCA
GGGACGCCGACCGGATCGTCGTACTCGACGAGGGACGGGTCGTGGGGGTGGGGCGCCATCACGAGTTGATGACGGACAAC
GAGACGTATCGGGAGATCGTGCTCTCCCAGTTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393