Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG407_RS06335 Genome accession   NZ_CP109416
Coordinates   1494785..1495792 (+) Length   335 a.a.
NCBI ID   WP_405868309.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01515     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489785..1500792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG407_RS06320 (OG407_06320) - 1491235..1492059 (-) 825 WP_405855813.1 carbohydrate ABC transporter permease -
  OG407_RS06325 (OG407_06325) - 1492056..1493051 (-) 996 WP_405855815.1 carbohydrate ABC transporter permease -
  OG407_RS06330 (OG407_06330) - 1493048..1494370 (-) 1323 WP_405855817.1 extracellular solute-binding protein -
  OG407_RS06335 (OG407_06335) cytR 1494785..1495792 (+) 1008 WP_405868309.1 LacI family DNA-binding transcriptional regulator Regulator
  OG407_RS06340 (OG407_06340) - 1495947..1498892 (+) 2946 WP_405855819.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36048.22 Da        Isoelectric Point: 5.8759

>NTDB_id=675739 OG407_RS06335 WP_405868309.1 1494785..1495792(+) (cytR) [Streptomyces sp. NBC_01515]
MADVAQRAGVTKQTVSNVVRGRTVVSPETRARVEAAIAELGYTPNLVARSLSTGTTMTIGFIVPTIANPFYSEVVEEVEM
LLEERGYHLLLATTRGDGDRARRQLATLSNRSVDALLVAGDFDIGEQLSPQSELELPVVLCAWEIDPPDTLPVVTIDYEK
AGYLAGRHLRKLGHRQVAVIADLPAHRVRVAGVRRAFAEDGITVPDDLVFTAPGATPESGYEAALRALPQLRATEPVTAV
FTSTDAIALGVMEVFRHQGLRVPEDISVVGIDDIPQAAHAHPPLTTVALPKRQMAREATELLWRGIANSRPAAPSLTLLR
PEVVPRASSAPPAVH

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=675739 OG407_RS06335 WP_405868309.1 1494785..1495792(+) (cytR) [Streptomyces sp. NBC_01515]
ATGGCCGACGTCGCGCAGCGCGCCGGCGTCACCAAGCAGACCGTCTCCAACGTGGTCCGGGGGCGCACGGTCGTCAGCCC
CGAGACCAGGGCGAGAGTCGAGGCCGCCATCGCCGAACTGGGGTACACACCCAACCTGGTGGCCCGGAGCCTGTCCACGG
GCACCACCATGACCATCGGCTTCATCGTGCCCACCATCGCCAACCCCTTCTACTCGGAGGTGGTGGAGGAGGTGGAGATG
CTGCTGGAGGAACGCGGTTACCACCTGCTGCTTGCCACGACCAGGGGCGACGGGGACCGCGCCCGGCGTCAACTGGCCAC
CCTCTCCAACCGGTCGGTGGACGCGCTCCTGGTGGCCGGCGACTTCGACATCGGCGAACAGCTGTCCCCGCAGAGCGAGT
TGGAGCTGCCGGTCGTGCTGTGTGCCTGGGAGATCGATCCGCCGGACACGCTGCCCGTGGTCACCATCGACTACGAGAAG
GCCGGGTATCTGGCCGGGCGGCACCTCCGGAAGCTCGGTCACCGGCAGGTGGCGGTGATCGCGGACCTCCCGGCACACCG
GGTCCGGGTGGCCGGCGTCCGGCGGGCCTTCGCCGAGGACGGGATCACGGTCCCCGACGACCTGGTGTTCACGGCACCGG
GAGCGACACCCGAGTCCGGTTACGAGGCGGCGCTGCGAGCGCTGCCGCAGTTGCGTGCGACGGAGCCCGTGACGGCCGTG
TTCACCTCCACCGACGCCATCGCCCTGGGGGTGATGGAGGTCTTCCGGCACCAGGGACTCCGCGTGCCGGAGGACATCTC
GGTCGTCGGCATCGACGACATCCCCCAGGCGGCACACGCCCATCCGCCCCTGACCACGGTGGCCCTGCCGAAGCGGCAGA
TGGCCAGGGAGGCCACCGAGTTGCTGTGGCGAGGCATCGCCAACAGCAGACCGGCCGCCCCGTCCCTGACTCTCCTACGG
CCCGAGGTCGTCCCCCGCGCGAGTTCCGCGCCGCCCGCCGTCCACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(167-329)

Bacterial regulatory proteins, lacI family (LacI)

(1-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.367