Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MU412_RS16835 Genome accession   NZ_CP095145
Coordinates   3393240..3393836 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Iso00100     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3388240..3398836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU412_RS16820 helD 3388448..3390502 (-) 2055 WP_032416944.1 DNA helicase IV -
  MU412_RS16825 - 3390627..3391073 (+) 447 WP_002898425.1 YccF domain-containing protein -
  MU412_RS16830 yccS 3391091..3393226 (+) 2136 WP_002898422.1 YccS family putative transporter -
  MU412_RS16835 sxy/tfoX 3393240..3393836 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  MU412_RS16840 sulA 3394185..3394694 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  MU412_RS16845 ompA 3395047..3396117 (+) 1071 WP_002898408.1 porin OmpA -
  MU412_RS16850 matP 3396249..3396701 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  MU412_RS16855 - 3396887..3398644 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=675726 MU412_RS16835 WP_004179217.1 3393240..3393836(-) (sxy/tfoX) [Klebsiella pneumoniae strain Iso00100]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=675726 MU412_RS16835 WP_004179217.1 3393240..3393836(-) (sxy/tfoX) [Klebsiella pneumoniae strain Iso00100]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51