Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MU413_RS17295 Genome accession   NZ_CP095140
Coordinates   3442204..3442800 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Iso00199     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437204..3447800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU413_RS17280 helD 3437412..3439466 (-) 2055 WP_004224033.1 DNA helicase IV -
  MU413_RS17285 - 3439591..3440037 (+) 447 WP_004224032.1 YccF domain-containing protein -
  MU413_RS17290 yccS 3440055..3442190 (+) 2136 WP_002898422.1 YccS family putative transporter -
  MU413_RS17295 sxy/tfoX 3442204..3442800 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  MU413_RS17300 sulA 3443149..3443658 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  MU413_RS17305 ompA 3444011..3445081 (+) 1071 WP_002898408.1 porin OmpA -
  MU413_RS17310 matP 3445212..3445664 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  MU413_RS17315 - 3445850..3447607 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=675702 MU413_RS17295 WP_004179217.1 3442204..3442800(-) (sxy/tfoX) [Klebsiella pneumoniae strain Iso00199]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=675702 MU413_RS17295 WP_004179217.1 3442204..3442800(-) (sxy/tfoX) [Klebsiella pneumoniae strain Iso00199]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51