Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG524_RS18260 Genome accession   NZ_CP109404
Coordinates   4072657..4073787 (-) Length   376 a.a.
NCBI ID   WP_405389765.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4067657..4078787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG524_RS18250 (OG524_18210) gyrB 4069617..4071686 (-) 2070 WP_405389767.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG524_RS18255 (OG524_18215) - 4072091..4072660 (-) 570 WP_405389766.1 DUF721 domain-containing protein -
  OG524_RS18260 (OG524_18220) recF 4072657..4073787 (-) 1131 WP_405389765.1 DNA replication/repair protein RecF Machinery gene
  OG524_RS18265 (OG524_18225) gnd 4073837..4074715 (-) 879 WP_384494699.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG524_RS18270 (OG524_18230) dnaN 4074847..4075977 (-) 1131 WP_056793166.1 DNA polymerase III subunit beta -
  OG524_RS18275 (OG524_18235) dnaA 4076965..4078737 (-) 1773 WP_405389764.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40716.34 Da        Isoelectric Point: 6.8612

>NTDB_id=675698 OG524_RS18260 WP_405389765.1 4072657..4073787(-) (recF) [Streptomyces sp. NBC_01520]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLVATLQPLADKAYADVAPGGGPVTLDYRSSIGADVV
PASTRDELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAKGYASHGESWSYALALRLASYDLLRTEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYAVSAGAVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=675698 OG524_RS18260 WP_405389765.1 4072657..4073787(-) (recF) [Streptomyces sp. NBC_01520]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGTGCCAACGGCCAGGGCAAGACCAACCTGGTCGAGGCGGTCGGCTATCTCGCGACGCTCGGCAGCCACCGGG
TGTCGTCCGACGCCCCGCTGGTCCGGATGGGCGCCGAGCGTGCCGTCGTCAGGGCCGCGGTCACACAGGGCGAGCGGTCC
CAGCTGATCGAGCTCGAGCTCAACCCGGGCCGCGCGAATCGTGCCCGTATCAACAGGTCCTCGCAGGTCAGGCCCCGCGA
CGTACTGGGGATAGTCCGGACGGTGCTGTTCGCCCCCGAGGACCTGGCCCTGGTGAAGGGCGACCCTGGTGAGCGCAGAC
GCTTCCTGGACGAGCTGATCACGGCGCGTTCGCCGCGGATGGCGGGCGTCCGCTCCGACTACGAACGGGTGCTGAAGCAG
CGCAACACCCTGCTCAAGTCCGCGGCGATGGCCCGCCGGCACGGCGGCCGGTCGATGGACCTGTCCACCCTGGACGTGTG
GGACCAGCACCTGGGCCGCGTGGGCGCGGAGCTGCTCGCGCAGCGGCTGGACCTGGTCGCCACGCTGCAGCCGCTGGCGG
ACAAGGCGTACGCGGACGTGGCTCCCGGCGGTGGCCCGGTCACCCTGGACTACCGCAGCTCGATCGGCGCCGACGTGGTG
CCGGCCAGCACCCGCGACGAGCTGTACGAGCAGGTGATGGCGGCGCTCGCCGAGGCCCGCAAGCAGGAGATCGAGCGGGG
CGTGACCCTCGTCGGCCCGCACCGTGACGATCTGGTGCTGGGACTGCGCGGAATGCCGGCCAAGGGGTACGCGAGCCACG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGATCTGCTGCGCACCGAGGGCAACGAGCCGGTGCTC
GTGCTGGACGACGTGTTCGCCGAGCTGGACGCGCGCCGCCGTGAACGGCTGGCGGAGCTGGTGGCGCCGGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGACGACGACGTCCCGGGGGTGCTGGCGGGCGCGCGTTACGCGGTGTCCGCGGGGGCGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.483

94.681

0.364