Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MU414_RS15395 Genome accession   NZ_CP095137
Coordinates   3111466..3112095 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain Iso00225     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3106466..3117095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU414_RS15380 helD 3106708..3108762 (-) 2055 WP_001295938.1 DNA helicase IV -
  MU414_RS15385 yccF 3108885..3109331 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MU414_RS15390 yccS 3109341..3111503 (+) 2163 WP_000875041.1 YccS family putative transporter -
  MU414_RS15395 sxy/tfoX 3111466..3112095 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MU414_RS15400 sulA 3112314..3112823 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  MU414_RS15405 ompA 3113179..3114231 (+) 1053 WP_001346420.1 porin OmpA -
  MU414_RS15410 matP 3114307..3114759 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  MU414_RS15415 ycbZ 3114945..3116705 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=675679 MU414_RS15395 WP_000839151.1 3111466..3112095(-) (sxy/tfoX) [Escherichia coli strain Iso00225]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=675679 MU414_RS15395 WP_000839151.1 3111466..3112095(-) (sxy/tfoX) [Escherichia coli strain Iso00225]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995