Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG524_RS11385 Genome accession   NZ_CP109404
Coordinates   2496708..2497700 (-) Length   330 a.a.
NCBI ID   WP_405390954.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01520     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2491708..2502700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG524_RS11360 (OG524_11330) - 2493242..2493862 (+) 621 WP_405390959.1 TetR/AcrR family transcriptional regulator -
  OG524_RS11365 (OG524_11335) - 2493965..2494636 (+) 672 WP_405810064.1 NADPH-dependent F420 reductase -
  OG524_RS11370 (OG524_11340) - 2494792..2495508 (-) 717 WP_405810066.1 NADPH-dependent F420 reductase -
  OG524_RS11375 (OG524_11345) - 2495673..2496185 (-) 513 WP_405390956.1 flavin reductase family protein -
  OG524_RS11380 (OG524_11350) - 2496185..2496673 (-) 489 WP_405810068.1 hypothetical protein -
  OG524_RS11385 (OG524_11355) cytR 2496708..2497700 (-) 993 WP_405390954.1 LacI family DNA-binding transcriptional regulator Regulator
  OG524_RS11390 (OG524_11360) - 2498028..2499746 (+) 1719 WP_405810070.1 discoidin domain-containing protein -
  OG524_RS11395 (OG524_11365) - 2499958..2501292 (+) 1335 WP_405810072.1 DUF1996 domain-containing protein -
  OG524_RS11400 (OG524_11370) - 2501313..2502044 (+) 732 WP_405810074.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35123.08 Da        Isoelectric Point: 6.3570

>NTDB_id=675677 OG524_RS11385 WP_405390954.1 2496708..2497700(-) (cytR) [Streptomyces sp. NBC_01520]
MKRPTLDVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVNELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVSHLLERGRRRIATITGPLELYEARERLDGYRQTLRDTGRRSIVALGDFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVCSPMADQATAAVHLLLGLIDGGPTRPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=675677 OG524_RS11385 WP_405390954.1 2496708..2497700(-) (cytR) [Streptomyces sp. NBC_01520]
ATGAAACGCCCCACTCTCGATGTGGTAGCCGCCCGAGCGGGCGTGTCCAAATCGAGCGTCTCCCGGGTCATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTGAACGAACTGGGCTACGTGCCCAACGGCGCGGCAC
GCAATCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTGTCCGACCCGCCTCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGGGAGCTCGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGAGTCGTGCAGTACATCGCCGGCGGGCATGTGGACGGCGTGCTCCTGGTCGCCCTGCACGGGA
CGGATCCGCTGCCGGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCACAGGACGTCCCG
TACGTCGCGCTGGACAACGCCGGTGGAGCGGCGCTGGCCGTGAGTCATCTCCTGGAGCGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTGTACGAGGCGCGGGAGCGCCTCGATGGCTACCGTCAGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCACTGGGCGACTTCACCAGAGCCTCCGGCGCCGAAGCCATGCGGCAGCTCCTGGAGGACGATCCCGAC
CTCGATGCGGTGTTCGCAGCCAACGACCTGATGGCGATAGGAGCCCTGCGCACCCTCCATCAAGCGGGCCGGCGTGTCCC
CGAAGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTGTGCAGCC
CGATGGCCGACCAGGCGACCGCCGCCGTCCACCTGCTCCTCGGTCTGATCGACGGCGGCCCCACACGGCCGGTGATCATG
CCGAACGAACTCGTCGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361