Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG422_RS18195 Genome accession   NZ_CP109397
Coordinates   4034312..4036213 (+) Length   633 a.a.
NCBI ID   WP_405747862.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01525     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4029312..4041213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG422_RS18175 (OG422_18145) - 4029523..4030221 (-) 699 WP_405743718.1 DUF2993 domain-containing protein -
  OG422_RS18180 (OG422_18150) - 4030465..4031847 (-) 1383 WP_405743719.1 hypothetical protein -
  OG422_RS18185 (OG422_18155) - 4031858..4032103 (-) 246 WP_405747860.1 MoaD/ThiS family protein -
  OG422_RS18190 (OG422_18160) rcrP 4032468..4034201 (+) 1734 WP_405743720.1 ABC transporter ATP-binding protein Regulator
  OG422_RS18195 (OG422_18165) rcrQ 4034312..4036213 (+) 1902 WP_405747862.1 ABC transporter ATP-binding protein Regulator
  OG422_RS18200 (OG422_18170) - 4036215..4037096 (-) 882 WP_405743721.1 alpha/beta hydrolase -
  OG422_RS18205 (OG422_18175) - 4037333..4038130 (+) 798 WP_405743722.1 response regulator transcription factor -
  OG422_RS18210 (OG422_18180) - 4038246..4039271 (+) 1026 WP_405743723.1 LacI family DNA-binding transcriptional regulator -
  OG422_RS18215 (OG422_18185) - 4039424..4040518 (+) 1095 WP_185993994.1 S1C family serine protease -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 67758.59 Da        Isoelectric Point: 5.6943

>NTDB_id=675634 OG422_RS18195 WP_405747862.1 4034312..4036213(+) (rcrQ) [Streptomyces sp. NBC_01525]
MGGPPLVKSLDFKGSGKRLLSQLRPQRAALTGALLLTVASVALTVTGPRVLGHATDLLLAGLVGRHLPSGVTEQQAAEQL
RAHGQGGLADLIGKLPLVPGHGIDFTAVGTVLLYATLIYAAAALFGFLQARLVTTAVQGTVFRMREQVEEKLARLPLNYF
DKQQRGEVLSRATNDIDNIQQTLQQSLSQIVTSVLTVLGVLAMMFWITPLLAAVALATVPLSVIVATRVGKRAQPQFVKQ
WSSTGKLNGHVEEMYTGHSLVRVFGRQKESAERFREQNDALYEAGFKAQAISGLIQPAMTFVGNLNYVLIAVVGGLQVAS
GALSVGEVQAFIQYSRQFSQPLTQIAALANLVQSGVASAERVFELLDAEEQTPDPEPSAAPARTVGRVAFEDVSFRYDED
KPLIEGLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYETRSGRITLDGTDIATVGREELRSRIGMVLQDTWLFGGTIAE
NIAYGAPDGTPHEKVVEAARATHVDRFVRTLPDGYDSVVDDEGGSVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQQAMARLRTGRTSFVIAHRLSTIRDADLILVMESGALVEQGTHDTLLAADGAYARLYAAQFAEAVVEAG

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=675634 OG422_RS18195 WP_405747862.1 4034312..4036213(+) (rcrQ) [Streptomyces sp. NBC_01525]
ATGGGCGGCCCGCCGCTCGTCAAATCGCTGGACTTCAAGGGCTCCGGCAAGCGGCTGCTGAGCCAGCTGCGGCCGCAGCG
CGCCGCGCTCACCGGCGCGCTGCTGCTGACCGTGGCGTCCGTGGCGCTGACCGTCACCGGCCCGCGCGTCCTCGGGCACG
CCACCGACCTGCTCCTCGCCGGACTGGTCGGCCGTCACCTGCCGTCCGGCGTCACCGAGCAACAGGCCGCCGAGCAGCTG
CGCGCCCACGGCCAGGGCGGCCTCGCCGACCTCATCGGCAAGCTGCCGCTCGTCCCCGGCCACGGCATCGACTTCACCGC
CGTCGGCACCGTCCTGCTCTACGCCACGCTGATCTACGCGGCGGCCGCCCTCTTCGGTTTCCTCCAGGCGCGGCTGGTCA
CCACCGCCGTCCAGGGCACCGTCTTCCGGATGCGCGAGCAGGTCGAGGAGAAGCTGGCGCGGCTGCCGCTGAACTACTTC
GACAAGCAGCAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAACATCCAGCAGACCCTTCAGCAGAGTCT
GAGCCAGATCGTCACGTCGGTGCTGACCGTCCTCGGCGTCCTCGCGATGATGTTCTGGATCACGCCGCTGCTGGCGGCGG
TCGCGCTGGCCACGGTGCCGCTGTCGGTGATCGTCGCCACCCGGGTCGGCAAGCGCGCGCAGCCGCAGTTCGTCAAGCAG
TGGTCGTCCACCGGCAAGCTCAACGGCCATGTCGAGGAGATGTACACCGGCCACTCCCTGGTGCGGGTCTTCGGCCGCCA
GAAGGAGTCCGCCGAGCGTTTCCGCGAGCAGAACGACGCGCTCTACGAGGCGGGCTTCAAGGCACAGGCCATCTCCGGCC
TCATCCAGCCCGCGATGACCTTCGTCGGCAACCTCAACTACGTACTGATCGCCGTCGTCGGCGGGCTGCAGGTCGCCTCC
GGCGCGCTCTCCGTCGGCGAGGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACGCAGATCGCGGC
GCTGGCCAACCTCGTACAGTCCGGCGTGGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCGAGGAGCAGACGCCCG
ACCCGGAGCCGTCCGCCGCCCCGGCACGCACCGTCGGCCGCGTCGCCTTCGAGGACGTCTCGTTCCGCTACGACGAGGAC
AAGCCGCTGATCGAGGGCCTGTCGCTGACCGTCGAGCCCGGCCAGACCGTCGCCATCGTCGGGCCCACCGGCGCCGGGAA
GACCACCCTCGTCAACCTCCTGATGCGGTTCTACGAGACCCGTTCCGGCCGGATCACCCTCGACGGCACCGACATCGCCA
CCGTCGGCCGCGAGGAGCTGCGCTCCCGCATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACCATCGCCGAG
AACATCGCCTACGGCGCCCCCGACGGCACCCCGCACGAGAAGGTCGTCGAGGCCGCCCGCGCCACCCACGTCGACCGCTT
CGTCCGCACCCTGCCGGACGGCTACGACAGCGTCGTGGACGACGAGGGCGGCAGCGTCTCCGTCGGCGAGAAGCAGCTGA
TCACCATCGCCCGCGCGTTCCTCGCCGAGCCCGCCATCCTCGTCCTCGACGAGGCCACCAGCTCCGTCGACACCCGCACC
GAGGTCCTGATCCAGCAGGCCATGGCCCGGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACCAT
CCGCGACGCCGACCTGATCCTCGTCATGGAATCCGGCGCCCTCGTCGAACAGGGCACCCACGACACCCTCCTCGCCGCCG
ACGGCGCCTACGCCCGCCTCTACGCGGCCCAGTTCGCGGAGGCGGTGGTGGAGGCCGGATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(33-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.546

98.104

0.408