Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG422_RS18190 Genome accession   NZ_CP109397
Coordinates   4032468..4034201 (+) Length   577 a.a.
NCBI ID   WP_405743720.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01525     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4027468..4039201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG422_RS18160 (OG422_18135) - 4027865..4028152 (-) 288 WP_143943862.1 DUF1416 domain-containing protein -
  OG422_RS18165 (OG422_18140) - 4028201..4029046 (-) 846 WP_405743717.1 sulfurtransferase -
  OG422_RS18170 - 4029212..4029319 (-) 108 WP_391640940.1 Ms5788A family Cys-rich leader peptide -
  OG422_RS18175 (OG422_18145) - 4029523..4030221 (-) 699 WP_405743718.1 DUF2993 domain-containing protein -
  OG422_RS18180 (OG422_18150) - 4030465..4031847 (-) 1383 WP_405743719.1 hypothetical protein -
  OG422_RS18185 (OG422_18155) - 4031858..4032103 (-) 246 WP_405747860.1 MoaD/ThiS family protein -
  OG422_RS18190 (OG422_18160) rcrP 4032468..4034201 (+) 1734 WP_405743720.1 ABC transporter ATP-binding protein Regulator
  OG422_RS18195 (OG422_18165) rcrQ 4034312..4036213 (+) 1902 WP_405747862.1 ABC transporter ATP-binding protein Regulator
  OG422_RS18200 (OG422_18170) - 4036215..4037096 (-) 882 WP_405743721.1 alpha/beta hydrolase -
  OG422_RS18205 (OG422_18175) - 4037333..4038130 (+) 798 WP_405743722.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62423.74 Da        Isoelectric Point: 7.8148

>NTDB_id=675633 OG422_RS18190 WP_405743720.1 4032468..4034201(+) (rcrP) [Streptomyces sp. NBC_01525]
MLVRLARAHLRPHRRAISLIVLLQLIQTLATISLPTLNADIIDNGVVRGDTGYILRVGGFMIAIALVQVVCATGAVYIGA
RTAMRLGRDIRAAVFDRVQTFSAREVAAFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGVIMALNQDVPLSGL
LLVIVTILGIFVSLIVRRLRPLFRSVQERIDTVNRVLREQITGIRVIRAFVRDRHEQQRFAAANTDLYDVSLRSGKLMST
MFPLVMMIVNLSSVAVVWFGGLRIDSGAMQIGALTAFLSYLMYILMSIMMATFMTMMLPRAEVCAERIQEVLDTDSSVVP
PERPVSTLSRPGELELRGVEFRFPGAEEPVLKDISLRARPGETTAVIGSTGSGKSTLIGLVPRLFDATGGTVLVGGEDVR
TLDEATLARTIGLVPQRPYLFSGTVASNLRHGDPDATDEDLWRALETAQAKEFVAAMEGGLQAPVAQGGSNVSGGQRQRL
AIARALVGKPDLYLFDDSFSALDYATDAALRAALARETGGASVVIVAQRVATIRGADRIIVLDEGRVVGTGTHTELMADN
ATYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=675633 OG422_RS18190 WP_405743720.1 4032468..4034201(+) (rcrP) [Streptomyces sp. NBC_01525]
GTGTTGGTCCGACTCGCGCGGGCGCATTTGCGGCCCCACAGGCGCGCAATATCGCTGATCGTCCTCCTCCAGCTGATCCA
GACGCTGGCCACCATCTCGCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTCCGCGGGGACACGGGCTACA
TCCTGCGCGTCGGCGGCTTCATGATCGCCATCGCGCTGGTCCAGGTCGTCTGCGCGACCGGCGCCGTCTACATCGGCGCC
CGTACCGCCATGCGGCTGGGCCGGGACATCCGGGCGGCGGTCTTCGACCGGGTCCAGACGTTCTCCGCCCGCGAGGTGGC
CGCCTTCGGCGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGATGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCGTGATCATGGCGCTCAACCAGGACGTACCGCTCTCCGGCCTG
CTGCTGGTCATCGTCACGATCCTCGGGATCTTCGTCTCCCTCATCGTGCGCCGCCTGCGGCCGCTGTTCCGCAGCGTCCA
GGAGCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCACCGGTATCCGCGTCATCCGCGCCTTCGTCCGCGACC
GTCACGAACAGCAGCGGTTCGCCGCCGCCAACACCGACCTCTACGACGTGTCGCTGCGCTCCGGCAAGCTGATGTCGACG
ATGTTTCCGCTGGTCATGATGATCGTGAACTTGTCGAGCGTCGCCGTGGTCTGGTTCGGCGGGCTGCGCATCGACTCCGG
CGCGATGCAGATCGGCGCGCTCACCGCGTTCCTCAGCTACCTCATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGACGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGACAGCAGCGTCGTCCCG
CCCGAGCGGCCCGTCTCCACCCTGAGCCGCCCCGGCGAGCTGGAGCTGCGCGGTGTGGAGTTCCGCTTCCCCGGCGCCGA
GGAACCCGTCCTCAAGGACATCTCGCTGCGCGCCCGGCCCGGCGAGACCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGATCGGCCTGGTGCCGCGCCTCTTCGACGCGACCGGCGGCACCGTCCTGGTCGGCGGCGAGGACGTCCGC
ACCCTCGACGAGGCGACGCTGGCCCGCACCATCGGCCTCGTCCCGCAGAGGCCGTACCTCTTCTCCGGCACCGTCGCCAG
CAACCTCCGCCACGGCGACCCGGACGCCACCGACGAGGACCTGTGGCGGGCCCTGGAGACCGCGCAGGCCAAGGAGTTCG
TCGCGGCGATGGAGGGCGGCCTCCAGGCGCCCGTCGCGCAGGGCGGCTCCAACGTCTCCGGCGGGCAGCGCCAGCGCCTG
GCCATCGCCCGCGCGCTGGTCGGCAAGCCGGACCTCTACCTCTTCGACGACTCGTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCGCTGCGCGCCGCGCTGGCCCGCGAGACCGGCGGCGCAAGCGTCGTCATCGTCGCCCAGCGCGTCGCCACCATCC
GCGGCGCCGACCGCATCATCGTCCTCGACGAGGGCCGCGTCGTCGGCACCGGAACCCACACCGAACTGATGGCGGACAAC
GCCACGTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-287)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.852

93.934

0.374