Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MU416_RS13945 Genome accession   NZ_CP095125
Coordinates   2889284..2889913 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Iso00270     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884284..2894913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU416_RS13930 helD 2884526..2886580 (-) 2055 WP_001295354.1 DNA helicase IV -
  MU416_RS13935 yccF 2886703..2887149 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MU416_RS13940 yccS 2887159..2889321 (+) 2163 WP_000875058.1 YccS family putative transporter -
  MU416_RS13945 sxy/tfoX 2889284..2889913 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MU416_RS13950 sulA 2890132..2890641 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MU416_RS13955 ompA 2890998..2892038 (+) 1041 WP_000750416.1 porin OmpA -
  MU416_RS13960 matP 2892114..2892566 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MU416_RS13965 ycbZ 2892752..2894512 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=675632 MU416_RS13945 WP_000839153.1 2889284..2889913(-) (sxy/tfoX) [Escherichia coli strain Iso00270]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=675632 MU416_RS13945 WP_000839153.1 2889284..2889913(-) (sxy/tfoX) [Escherichia coli strain Iso00270]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1