Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JMUB0001_RS11105 Genome accession   NZ_AP014956
Coordinates   2280891..2282258 (-) Length   455 a.a.
NCBI ID   WP_030059235.1    Uniprot ID   A0A7X9WHY7
Organism   Staphylococcus capitis strain TW2795     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2275891..2287258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB0001_RS11090 (JMUB0001_2175) cysE 2276753..2277382 (-) 630 WP_171002259.1 serine O-acetyltransferase -
  JMUB0001_RS11095 (JMUB0001_2176) gltX 2277805..2279259 (-) 1455 WP_002433261.1 glutamate--tRNA ligase -
  JMUB0001_RS11100 (JMUB0001_2177) - 2279669..2280751 (-) 1083 WP_016898735.1 PIN/TRAM domain-containing protein -
  JMUB0001_RS11105 (JMUB0001_2178) radA 2280891..2282258 (-) 1368 WP_030059235.1 DNA repair protein RadA Machinery gene
  JMUB0001_RS11110 (JMUB0001_2179) - 2282601..2285054 (-) 2454 WP_002433302.1 ATP-dependent Clp protease ATP-binding subunit -
  JMUB0001_RS11115 (JMUB0001_2180) - 2285069..2286073 (-) 1005 WP_002433454.1 protein arginine kinase -
  JMUB0001_RS11120 (JMUB0001_2181) - 2286066..2286629 (-) 564 WP_030059233.1 UvrB/UvrC motif-containing protein -
  JMUB0001_RS11125 (JMUB0001_2182) - 2286649..2287110 (-) 462 WP_002433457.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49847.24 Da        Isoelectric Point: 6.8755

>NTDB_id=67554 JMUB0001_RS11105 WP_030059235.1 2280891..2282258(-) (radA) [Staphylococcus capitis strain TW2795]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQKLDNVKHESTPRILTDSKEFNRA
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALHSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=67554 JMUB0001_RS11105 WP_030059235.1 2280891..2282258(-) (radA) [Staphylococcus capitis strain TW2795]
GTGGCCAAGAAAAAAGTAATATTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGGAAATGTCCAAACTG
TGGTGCATGGAACCAGATGGAAGAAATTGTAGAGAAAGCTGCAAACCCTAAACATGGAGTGAAATCTAAAGAAGCAGCTG
GAAAAGTTCAAAAATTGGATAATGTTAAACATGAATCTACCCCTAGAATTCTAACGGATTCTAAAGAATTTAACAGAGCC
CTTGGTGGAGGGATTGTCAGTGGATCACTCGTACTTATAGGTGGCGATCCTGGTATTGGGAAGTCTACGTTGCTTCTTCA
AATATGTGCGGCATTATCTCAAAATAAGAATGTCTTATATATTACAGGTGAGGAATCTATCAATCAGACTAAACTACGTG
CCGATCGCTTAGAAGAAGATTCTAGTCAACTCAATGTATTAGCAGAGACTGATTTAGAAGTCATTCATCAAACAGTTAAG
GATGAACGCCCAGATTTACTTGTAGTAGATTCAATTCAAACTATTTATCATCCTGAAATCAGTTCTGCACCGGGTTCTGT
ATCTCAAGTAAGAGAAAGTACCCAAAGTCTAATGAATATCGCAAAGCAAATGGATATCGCAACGTTCATCGTCGGTCATG
TTACGAAAGAAGGACAAATTGCCGGTCCAAGATTACTTGAACATATGGTGGATACCGTGCTTTACTTTGAAGGTGATGAA
CATCATGCTTATCGAATTTTACGTGCGGTTAAAAACCGTTTTGGCTCCACGAATGAGATGGGTATTTTCGAAATGAAGCA
AAGTGGTTTGAAAGGTGTCTTAAATCCGTCTGAAATGTTCTTAGAAGAACGTTCTACAAACGTGCCAGGTTCAACAATTG
TACCGACTATGGAAGGTACAAGACCATTATTAATAGAGGTCCAAGCGTTAGTCACACCGACCACTTTCAACAATCCAAGA
CGTATGGCTACGGGCATAGATCATAATCGATTAAGTTTGCTTATGGCAGTTTTAGAGAAGAAGGAGAATTATTTACTTCA
ACAACAAGATGCTTATATCAAAGTTGCTGGTGGTGTGAAATTAACAGAACCAGCCGTTGACTTAAGTATTATTGTTGCGA
CAGCTTCAAGCTTTAAGGATAAAGCGGTAGACGGTTTAGATTGCTTTGTTGGAGAGGTTGGTCTAACAGGTGAAGTTCGA
CGTGTGTCACGCATTGAACAACGCGTGCAAGAGGCGGCTAAACTTGGATTCAAACGAGCGATTATACCTCAGACTAATAT
TGGTGGGTGGACTTTCCCGGAAGGTATTCAAGTCATAGGAGTGTCTTCTGTGCATGAGGCTTTAAAATATGCGCTTCATT
CTTCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.228

100

0.664
  radA Streptococcus pneumoniae Rx1

60.802

98.681

0.6
  radA Streptococcus pneumoniae D39

60.802

98.681

0.6
  radA Streptococcus pneumoniae R6

60.802

98.681

0.6
  radA Streptococcus pneumoniae TIGR4

60.802

98.681

0.6
  radA Streptococcus mitis NCTC 12261

60.802

98.681

0.6
  radA Streptococcus mitis SK321

60.802

98.681

0.6

Multiple sequence alignment