Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG346_RS26895 Genome accession   NZ_CP109394
Coordinates   5794149..5795192 (+) Length   347 a.a.
NCBI ID   WP_266797012.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01530 strain NBC 01530     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5789149..5800192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG346_RS26880 (OG346_26890) - 5790508..5791413 (-) 906 WP_266797017.1 carbohydrate ABC transporter permease -
  OG346_RS26885 (OG346_26895) - 5791410..5792435 (-) 1026 WP_266797015.1 carbohydrate ABC transporter permease -
  OG346_RS26890 (OG346_26900) - 5792432..5793754 (-) 1323 WP_266797013.1 ABC transporter substrate-binding protein -
  OG346_RS26895 (OG346_26905) cytR 5794149..5795192 (+) 1044 WP_266797012.1 LacI family DNA-binding transcriptional regulator Regulator
  OG346_RS26900 (OG346_26910) - 5795476..5795792 (-) 317 Protein_5318 GNAT family N-acetyltransferase -
  OG346_RS26910 (OG346_26920) orn 5796319..5796921 (-) 603 WP_266797008.1 oligoribonuclease -
  OG346_RS26915 (OG346_26925) - 5797088..5798320 (-) 1233 WP_266797006.1 helix-turn-helix domain-containing protein -
  OG346_RS26920 (OG346_26930) - 5798699..5799031 (-) 333 WP_266680682.1 hypothetical protein -
  OG346_RS26925 (OG346_26935) - 5799340..5799867 (+) 528 WP_266680680.1 universal stress protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37548.45 Da        Isoelectric Point: 6.0132

>NTDB_id=675490 OG346_RS26895 WP_266797012.1 5794149..5795192(+) (cytR) [Streptomyces sp. NBC_01530 strain NBC 01530]
MSRSRSGGRPTLEEVAARAGVGRGTVSRVINGSPRVSDATRAAVEAAVAELGYVPNTAARALAANRTDAIALVVPEPETR
FFAEPYFSDMLKGVGAELSDTEMQLLLIFAGGDKERRRLAQYLAAHRVDGVLLVSVHADDPLPDLLAQLEIPAVISGPRS
AAETLTSVDSDNYGGGRSAVEHLAVRGRRSIAHITGRLDVYGAQRRVDGYRDALRDAGHEVDEQLIEPGDFTEEGGRRAM
TKLLARRPDLDAVFAGSDVMAAGARQVLREKGRRIPDDVALVGYDDSAIARHMDPPLTSVRQPIEEMGRRMIDLLLGEIA
DRRPAVSRDLERRQMVLATELVTRTSS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=675490 OG346_RS26895 WP_266797012.1 5794149..5795192(+) (cytR) [Streptomyces sp. NBC_01530 strain NBC 01530]
ATGTCGCGGAGCCGAAGCGGGGGGCGGCCCACGCTCGAAGAGGTGGCCGCCCGCGCCGGCGTGGGCCGCGGCACGGTCTC
CCGGGTGATCAACGGCTCGCCCAGGGTCAGCGACGCGACCCGGGCCGCGGTCGAGGCGGCGGTGGCCGAGCTCGGCTACG
TCCCCAACACGGCCGCTCGCGCCCTCGCGGCCAACCGCACCGACGCGATCGCCCTGGTCGTCCCCGAGCCGGAGACCCGC
TTCTTCGCGGAGCCGTACTTCTCGGACATGCTGAAGGGTGTCGGCGCCGAGCTGTCGGACACGGAGATGCAGCTTCTGCT
GATCTTCGCGGGCGGCGACAAGGAGCGCCGCCGGCTGGCCCAGTACCTGGCCGCCCACCGCGTGGACGGCGTCCTGCTGG
TCTCGGTGCACGCGGACGACCCGCTTCCGGATCTGCTGGCCCAGCTGGAGATCCCGGCGGTGATCAGCGGTCCGCGGTCG
GCCGCGGAGACGCTGACGTCGGTGGACTCGGACAACTACGGCGGCGGCCGCTCGGCGGTCGAGCACCTGGCCGTCCGGGG
CCGCCGCAGTATCGCGCACATCACGGGCCGCCTCGACGTCTACGGCGCCCAGCGGCGCGTCGACGGCTACCGCGACGCCC
TGCGCGACGCGGGCCACGAGGTCGACGAACAGCTCATCGAGCCGGGCGACTTCACCGAGGAGGGCGGCCGCCGGGCGATG
ACGAAACTGCTCGCCCGCCGCCCCGACCTGGACGCGGTCTTCGCGGGCTCGGACGTGATGGCGGCCGGCGCCCGCCAGGT
GCTGCGCGAGAAGGGCCGCCGCATCCCCGACGACGTGGCGCTCGTCGGCTACGACGACTCGGCCATCGCCCGCCACATGG
ACCCCCCGCTCACCAGCGTCCGCCAGCCCATCGAGGAGATGGGCCGCCGCATGATCGACCTCCTGCTCGGCGAGATCGCC
GACCGCCGCCCGGCCGTCTCCCGCGATCTGGAACGCCGGCAGATGGTACTGGCGACGGAGCTGGTGACGCGGACGTCGTC
CTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.182

100

0.366