Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA12_RS00320 Genome accession   NZ_CP095104
Coordinates   67452..69080 (-) Length   542 a.a.
NCBI ID   WP_262577716.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6179     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62452..74080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA12_RS00275 (MUA12_00270) - 62726..62989 (+) 264 WP_262557441.1 hypothetical protein -
  MUA12_RS00280 (MUA12_00275) - 63052..63558 (+) 507 WP_262557442.1 DUF4240 domain-containing protein -
  MUA12_RS00285 (MUA12_00280) - 63757..63900 (+) 144 WP_262577711.1 hypothetical protein -
  MUA12_RS00290 (MUA12_00285) - 63893..65118 (+) 1226 Protein_56 restriction endonuclease subunit S -
  MUA12_RS00295 (MUA12_00290) - 65168..65488 (+) 321 WP_262577713.1 hypothetical protein -
  MUA12_RS00300 (MUA12_00295) - 65480..65665 (-) 186 WP_262577714.1 hypothetical protein -
  MUA12_RS00305 (MUA12_00300) - 65716..66219 (-) 504 WP_262577715.1 DUF1643 domain-containing protein -
  MUA12_RS00310 (MUA12_00305) - 66234..66545 (-) 312 Protein_60 DUF960 family protein -
  MUA12_RS00315 (MUA12_00310) - 66641..66979 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA12_RS00320 (MUA12_00315) ccrB 67452..69080 (-) 1629 WP_262577716.1 cassette chromosome recombinase CcrB Machinery gene
  MUA12_RS00325 (MUA12_00320) ccrA 69102..70450 (-) 1349 Protein_63 cassette chromosome recombinase CcrA -
  MUA12_RS00330 (MUA12_00325) - 70627..70884 (-) 258 WP_031880299.1 hypothetical protein -
  MUA12_RS00335 (MUA12_00330) cch1 70952..72739 (-) 1788 WP_262577717.1 cassette chromosome replicative helicase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62838.84 Da        Isoelectric Point: 9.7323

>NTDB_id=675450 MUA12_RS00320 WP_262577716.1 67452..69080(-) (ccrB) [Staphylococcus simulans strain IVB6179]
MQQLKQKRVGIYVRVSTEIQSTEGYSINGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKRYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANNVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTQLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=675450 MUA12_RS00320 WP_262577716.1 67452..69080(-) (ccrB) [Staphylococcus simulans strain IVB6179]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CAACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGACAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
ATTCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAAGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGTAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAACGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTACAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATCAAACAACTTTTCAATAATACTCAGCTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.085

100

0.871