Detailed information NTG0675397

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG607_RS27020
• Genome accession: NZ_CP109392
• Coordinates: 5855599..5856585 (+)
• Length: 328 a.a.
• NCBI ID: WP_405728632.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01537 strain NBC 01537
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5850599..5861585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG607_RS26995 (OG607_26905)	-	5851812..5852579 (-)	768	WP_405728618.1	hypothetical protein	-
OG607_RS27000 (OG607_26910)	-	5852611..5853399 (-)	789	WP_405728621.1	dioxygenase	-
OG607_RS27005 (OG607_26915)	-	5853500..5854021 (+)	522	WP_405728624.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG607_RS27010 (OG607_26920)	-	5854036..5854662 (-)	627	WP_405728626.1	peptidoglycan-binding protein	-
OG607_RS27015 (OG607_26925)	-	5854895..5855422 (-)	528	WP_405728629.1	GNAT family N-acetyltransferase	-
OG607_RS27020 (OG607_26930)	rpoS	5855599..5856585 (+)	987	WP_405728632.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG607_RS27025 (OG607_26935)	-	5856764..5857546 (+)	783	WP_405728635.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG607_RS27030 (OG607_26940)	pfkB	5857543..5858493 (+)	951	WP_405728638.1	1-phosphofructokinase	-
OG607_RS27035 (OG607_26945)	-	5858531..5860552 (+)	2022	WP_405728641.1	fructose-specific PTS transporter subunit EIIC	-
OG607_RS27040 (OG607_26950)	-	5860649..5860810 (+)	162	WP_405728644.1	hypothetical protein	-
OG607_RS27045 (OG607_26955)	mscL	5860857..5861339 (-)	483	WP_405728647.1	large conductance mechanosensitive channel protein MscL	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 36420.90 Da
• Isoelectric Point: 5.0358

>NTDB_id=675397 OG607_RS27020 WP_405728632.1 5855599..5856585(+) (rpoS) [Streptomyces sp. NBC_01537 strain NBC 01537]
MATRAVARRTAGGSSSARAGHGEIADRDLVGMYLDEIARTPLLDAAQEVELSRAIEAGVYAEQLLAGEEHGPGADASREE
LEAIAAEGRQAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIA
DQSRTIRLPVHLVEELGRVRRVQREFNREHGRDPEPAEIAAELDSTPERVADVLDWARDPVSLNMSVDDEGETQFGDLVE
DTSAASPEDSVLVMLRREELEDLIGRLDDRTASIIRSRYGIIDGRERTLTEVGKQHGLTRERIRQIEKHALADLKRMARA
SGLAYEAA

Nucleotide

• Length: 987 bp

>NTDB_id=675397 OG607_RS27020 WP_405728632.1 5855599..5856585(+) (rpoS) [Streptomyces sp. NBC_01537 strain NBC 01537]
ATGGCAACCCGTGCCGTCGCCCGTCGTACCGCAGGCGGGAGCAGCAGCGCTCGCGCAGGGCATGGCGAGATCGCGGATCG
CGACCTCGTCGGAATGTACCTGGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCGCAGGAGGTCGAGCTTTCCAGGG
CGATAGAGGCAGGCGTCTACGCCGAGCAGCTCCTCGCGGGAGAGGAGCATGGTCCGGGCGCGGACGCGAGCCGCGAGGAG
CTCGAGGCGATAGCCGCCGAGGGCCGACAGGCCAAGGACGTCTTCATACGGTCCAACCTGCGCCTCGTCGTCGCCGTGGC
CCGGCGCTACCCGCGCAGCGGCCTCCCGCTGCTCGATCTCATCCAGGAGGGCAACGCAGGCCTGGTCCGCGCGGTGGAGA
AGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCCGTCAGGCCATCACCCGGTCGATCGCC
GACCAGTCCCGGACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTGGGCCGTGTCCGGCGCGTCCAGCGCGAGTTCAA
CCGCGAGCACGGGCGAGACCCCGAGCCCGCCGAGATCGCCGCGGAGCTGGACTCCACCCCGGAGCGCGTCGCCGATGTGC
TGGACTGGGCACGTGACCCGGTGAGCCTCAACATGTCCGTGGACGACGAGGGCGAGACCCAGTTCGGCGATCTGGTCGAG
GACACGTCCGCCGCCTCCCCGGAGGACTCCGTCCTCGTCATGCTCCGCCGTGAGGAGCTCGAAGACCTCATCGGCCGCCT
CGACGACCGCACCGCCTCCATCATCCGTTCCCGTTACGGCATCATCGACGGCCGCGAGCGCACCCTCACCGAGGTCGGCA
AGCAGCACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCTCTTGCCGACCTCAAGCGCATGGCCCGGGCA
TCGGGTCTCGCGTACGAGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

• Sigma-70 region 3 (Sigma70_r3) (174-250)

• Sigma-70, region 4 (Sigma70_r4) (264-315)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.667	91.463	0.372